» Articles » PMID: 34567023

, Encoding a Pentatricopeptide Repeat Protein, Is Essential for Chloroplast RNA Editing and Biogenesis in Soybean

Overview
Journal Front Plant Sci
Date 2021 Sep 27
PMID 34567023
Citations 5
Authors
Affiliations
Soon will be listed here.
Abstract

Chloroplast biogenesis and development are highly complex processes requiring interactions between plastids and nuclear genomic products. Pentatricopeptide repeat (PPR) proteins play an essential role in the development of chloroplasts; however, it remains unclear how RNA editing factors influence soybean development. In this study, a mutant () was identified with decreased chlorophyll contents. Genetic mapping revealed that a single-nucleotide deletion at position 1949 bp in the gene in the mutant, resulting in a truncated GmPGL2 protein. The nuclear-encoded is a PLS-type PPR protein that localizes to the chloroplasts. The C-to-U editing efficiencies of , , , , , and were reduced in the mutant. RNA electrophoresis mobility shift assay (REMSA) analysis further revealed that GmPGL2 binds to the immediate upstream sequences at RNA editing sites of and , respectively. In addition, GmPGL2 was found to interact with GmMORF8, GmMORF9, and GmORRM6. These results suggest that GmPGL2 participates in C-to-U RNA editing the formation of a complex RNA editosome in soybean chloroplasts.

Citing Articles

Two large inversions seriously suppress recombination and are essential for key genotype fixation in cabbage ( L. var. ).

Zhang B, Wu Y, Li S, Yang L, Zhuang M, Lv H Hortic Res. 2025; 11(4):uhae030.

PMID: 39896709 PMC: 11784747. DOI: 10.1093/hr/uhae030.


RNA Metabolism and the Role of Small RNAs in Regulating Multiple Aspects of RNA Metabolism.

Dawar P, Adhikari I, Mandal S, Jayee B Noncoding RNA. 2025; 11(1.

PMID: 39846679 PMC: 11755482. DOI: 10.3390/ncrna11010001.


A strategy for identification and characterization of genic mutations using a temperature-sensitive chlorotic soybean mutant as an example.

Hancock C, Germany T, Redd P, Timmons J, Lipford J, Burns S Plant Direct. 2024; 8(11):e70011.

PMID: 39513014 PMC: 11539004. DOI: 10.1002/pld3.70011.


Dissecting genomic regions and underlying candidate genes in groundnut MAGIC population for drought tolerance.

Sharma V, Mahadevaiah S, Latha P, Gowda S, Manohar S, Jadhav K BMC Plant Biol. 2024; 24(1):1044.

PMID: 39497063 PMC: 11536578. DOI: 10.1186/s12870-024-05749-3.


Diversity and structural-functional insights of alpha-solenoid proteins.

Arrias P, Osmanli Z, Peralta E, Chinestrad P, Monzon A, Tosatto S Protein Sci. 2024; 33(11):e5189.

PMID: 39465903 PMC: 11514114. DOI: 10.1002/pro.5189.


References
1.
Yu Q, Jiang Y, Chong K, Yang Z . AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. Plant J. 2009; 59(6):1011-23. DOI: 10.1111/j.1365-313X.2009.03930.x. View

2.
Hayes M, Giang K, Berhane B, Mulligan R . Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains. J Biol Chem. 2013; 288(51):36519-29. PMC: 3868764. DOI: 10.1074/jbc.M113.485755. View

3.
Huang W, Zhu Y, Wu W, Li X, Zhang D, Yin P . The Pentatricopeptide Repeat Protein SOT5/EMB2279 Is Required for Plastid and Intron Splicing. Plant Physiol. 2018; 177(2):684-697. PMC: 6001330. DOI: 10.1104/pp.18.00406. View

4.
Dai A, Yang S, Zhou H, Tang K, Li G, Leng J . Evolution and Expression Divergence of the CYP78A Subfamily Genes in Soybean. Genes (Basel). 2018; 9(12). PMC: 6316016. DOI: 10.3390/genes9120611. View

5.
Li X, Zhang Y, Hou M, Sun F, Shen Y, Xiu Z . Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa). Plant J. 2014; 79(5):797-809. DOI: 10.1111/tpj.12584. View