Mechanism of the Formation of Proton Transfer Pathways in Photosynthetic Reaction Centers
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In photosynthetic reaction centers from purple bacteria (PbRCs) from , the secondary quinone Q accepts two electrons and two protons via electron-coupled proton transfer (PT). Here, we identify PT pathways that proceed toward the Q binding site, using a quantum mechanical/molecular mechanical approach. As the first electron is transferred to Q, the formation of the Grotthuss-like pre-PT H-bond network is observed along Asp-L213, Ser-L223, and the distal Q carbonyl O site. As the second electron is transferred, the formation of a low-barrier H-bond is observed between His-L190 at Fe and the proximal Q carbonyl O site, which facilitates the second PT. As QH leaves PbRC, a chain of water molecules connects protonated Glu-L212 and deprotonated His-L190 forms, which serves as a pathway for the His-L190 reprotonation. The findings of the second pathway, which does not involve Glu-L212, and the third pathway, which proceeds from Glu-L212 to His-L190, provide a mechanism for PT commonly used among PbRCs.
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