Complete Genome Sequence of the Myophage Elbi

Overview

Journal Microbiol Resour Announc

Publisher American Society for Microbiology

Specialty Microbiology

Date 2021 Jul 22

PMID 34292064

Authors

Ria Patel

Julia Chen

Julie Xu

Emily Erdmann

Zoephia Laughlin

Richard M Alvey

Affiliations

Soon will be listed here.

Abstract

Here, we report the genome sequence of bacteriophage Elbi, which infects the cyanobacterium sp. strain PCC 7120, a model organism for prokaryotic multicellular development. The 68,626 bp encode 108 proteins, of which 31 can be assigned a function. Elbi is similar to two myophages, namely, A-1 and N-1, isolated in the 1970s.

References

Delcher A, Bratke K, Powers E, Salzberg S . Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics. 2007; 23(6):673-9. PMC: 2387122. DOI: 10.1093/bioinformatics/btm009. View

Soding J, Biegert A, Lupas A . The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 2005; 33(Web Server issue):W244-8. PMC: 1160169. DOI: 10.1093/nar/gki408. View

Cresawn S, Bogel M, Day N, Jacobs-Sera D, Hendrix R, Hatfull G . Phamerator: a bioinformatic tool for comparative bacteriophage genomics. BMC Bioinformatics. 2011; 12:395. PMC: 3233612. DOI: 10.1186/1471-2105-12-395. View

Chenard C, Wirth J, Suttle C . Viruses Infecting a Freshwater Filamentous Cyanobacterium (Nostoc sp.) Encode a Functional CRISPR Array and a Proteobacterial DNA Polymerase B. mBio. 2016; 7(3). PMC: 4916379. DOI: 10.1128/mBio.00667-16. View

Garneau J, Depardieu F, Fortier L, Bikard D, Monot M . PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data. Sci Rep. 2017; 7(1):8292. PMC: 5557969. DOI: 10.1038/s41598-017-07910-5. View

Adolph K, Haselkorn R . Isolation and characterization of a virus infecting the blue-green alga Nostoc muscorum. Virology. 1971; 46(2):200-8. DOI: 10.1016/0042-6822(71)90023-7. View

Russell D . Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes. Methods Mol Biol. 2017; 1681:109-125. DOI: 10.1007/978-1-4939-7343-9_9. View

Laslett D, Canback B . ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 2004; 32(1):11-6. PMC: 373265. DOI: 10.1093/nar/gkh152. View

Lowe T, Chan P . tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res. 2016; 44(W1):W54-7. PMC: 4987944. DOI: 10.1093/nar/gkw413. View

10.

Pope W, Jacobs-Sera D . Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview. Methods Mol Biol. 2017; 1681:217-229. DOI: 10.1007/978-1-4939-7343-9_16. View

11.

Grissa I, Vergnaud G, Pourcel C . CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 2007; 35(Web Server issue):W52-7. PMC: 1933234. DOI: 10.1093/nar/gkm360. View

12.

Besemer J, Borodovsky M . GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 2005; 33(Web Server issue):W451-4. PMC: 1160247. DOI: 10.1093/nar/gki487. View

13.

Altschul S, Gish W, Miller W, Myers E, Lipman D . Basic local alignment search tool. J Mol Biol. 1990; 215(3):403-10. DOI: 10.1016/S0022-2836(05)80360-2. View

14.

Hu N, Thiel T, Giddings Jr T, Wolk C . New Anabaena and Nostoc cyanophages from sewage settling ponds. Virology. 1981; 114(1):236-46. DOI: 10.1016/0042-6822(81)90269-5. View