A Python-based Programming Language for High-performance Computational Genomics

Overview

Journal Nat Biotechnol

Specialty Biotechnology

Date 2021 Jul 20

PMID 34282326

Citations 6

Authors

Ariya Shajii

Ibrahim Numanagic

Alexander T Leighton

Haley Greenyer

Saman Amarasinghe

Bonnie Berger

Affiliations

Soon will be listed here.

Citing Articles

Efficient mapping of accurate long reads in minimizer space with mapquik.

Ekim B, Sahlin K, Medvedev P, Berger B, Chikhi R Genome Res. 2023; 33(7):1188-1197.

PMID: 37399256 PMC: 10538364. DOI: 10.1101/gr.277679.123.

Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing.

Smajlovic H, Shajii A, Berger B, Cho H, Numanagic I Genome Biol. 2023; 24(1):5.

PMID: 36631897 PMC: 9832703. DOI: 10.1186/s13059-022-02841-5.

Navigating bottlenecks and trade-offs in genomic data analysis.

Berger B, Yu Y Nat Rev Genet. 2022; 24(4):235-250.

PMID: 36476810 PMC: 10204111. DOI: 10.1038/s41576-022-00551-z.

Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines.

Smajlovic H, Shajii A, Berger B, Cho H, Numanagic I IEEE Int Symp Parallel Distrib Process Workshops Phd Forum. 2022; 2022:164-165.

PMID: 35958356 PMC: 9364365.

Fast characterization of segmental duplication structure in multiple genome assemblies.

Iseric H, Alkan C, Hach F, Numanagic I Algorithms Mol Biol. 2022; 17(1):4.

PMID: 35303886 PMC: 8932185. DOI: 10.1186/s13015-022-00210-2.

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