» Articles » PMID: 34220230

The Cp Genome Characterization of Adenium Obesum: Gene Content, Repeat Organization and Phylogeny

Overview
Specialty Biology
Date 2021 Jul 5
PMID 34220230
Citations 3
Authors
Affiliations
Soon will be listed here.
Abstract

(Forssk.) Roem. & Schult. belonging to the family Apocynaceae, is remarkable for its horticultural and ornamental values, poisonous nature, and medicinal uses. In order to have understanding of cp genome characterization of highly valued medicinal plant, and the evolutionary and systematic relationships, the complete plastome / chloroplast (cp) genome of was sequenced. The assembled cp genome of was found to be 154,437 bp, with an overall GC content of 38.1%. A total of 127 unique coding genes were annotated including 96 protein-coding genes, 28 tRNA genes, and 3 rRNA genes. The repeat structures were found to comprise of only mononucleotide repeats. The SSR loci are compososed of only A/T bases. The phylogenetic analysis of cp genomes revealed its proximity with

Citing Articles

Deciphering the complete chloroplast genome sequence of Prain: Insights into genome structure, comparative analysis and phylogenetic relationship.

Ahmed S, Rahman M Heliyon. 2024; 10(16):e36204.

PMID: 39224270 PMC: 11367419. DOI: 10.1016/j.heliyon.2024.e36204.


Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Species.

Feng J, Wu L, Wang Q, Pan Y, Li B, Lin Y Biomed Res Int. 2022; 2022:2194021.

PMID: 35937412 PMC: 9348943. DOI: 10.1155/2022/2194021.


Complete Chloroplast Genome Sequence of Seemen (Fagaceae): Genome Structure, Adaptive Evolution, and Phylogenetic Relationships.

Liang D, Wang H, Zhang J, Zhao Y, Wu F Life (Basel). 2022; 12(1).

PMID: 35054485 PMC: 8778281. DOI: 10.3390/life12010092.

References
1.
Pattnaik S, Gupta S, Rao A, Panda B . SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data. BMC Bioinformatics. 2014; 15:40. PMC: 3926339. DOI: 10.1186/1471-2105-15-40. View

2.
Knudsen B, Forsberg R, Miyamoto M . A computer simulator for assessing different challenges and strategies of de novo sequence assembly. Genes (Basel). 2014; 1(2):263-82. PMC: 3954094. DOI: 10.3390/genes1020263. View

3.
Caboche S, Audebert C, Lemoine Y, Hot D . Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data. BMC Genomics. 2014; 15:264. PMC: 4051166. DOI: 10.1186/1471-2164-15-264. View

4.
Daniell H, Lin C, Yu M, Chang W . Chloroplast genomes: diversity, evolution, and applications in genetic engineering. Genome Biol. 2016; 17(1):134. PMC: 4918201. DOI: 10.1186/s13059-016-1004-2. View

5.
Gurung A, Ali M, Lee J, Al-Hemaid F, Farah M, Al-Anazi K . Molecular docking elucidates the plausible mechanisms underlying the anticancer properties of acetyldigitoxigenin from . Saudi J Biol Sci. 2020; 27(7):1907-1911. PMC: 7296488. DOI: 10.1016/j.sjbs.2020.04.020. View