» Articles » PMID: 34094714

Deciphering the Mutational Signature of Congenital Limb Malformations

Abstract

Congenital limb malformations (CLMs) affect 1 in 500 live births. However, the value of exome sequencing (ES) for CLM is lacking. The purpose of this study was to decipher the mutational signature of CLM on an exome level. We enrolled a cohort of 66 unrelated probands (including 47 families) with CLM requiring surgical correction. ES was performed for all patients and available parental samples. A definite molecular diagnosis was achieved in 21 out of 66 (32%) patients. We identified 19 pathogenic or likely pathogenic single-nucleotide variants and three copy number variants, of which 11 variants were novel. We identified four variants of uncertain significance. Additionally, we identified and as novel candidate genes for CLM. By comparing the detailed phenotypic features, we expand the phenotypic spectrum of diastrophic dysplasia and chromosome 6q terminal deletion syndrome. We also found that the diagnostic rate was significantly higher in patients with a family history of CLM (p = 0.012) or more than one limb affected (p = 0.034). Our study expands our understanding of the mutational and phenotypic spectrum of CLM and provides novel insights into the genetic basis of these syndromes.

Citing Articles

Clinical and genetic analysis in Chinese families with synpolydactyly, and cellular localization of HOXD13 with different length of polyalanine tract.

Chen X, Zhao F, Xu Y, Cao Y, Li S, Zhang X Front Genet. 2023; 14:1105046.

PMID: 37035736 PMC: 10073534. DOI: 10.3389/fgene.2023.1105046.


Landscape of Secondary Findings in Chinese Population: A Practice of ACMG SF v3.0 List.

Huang Y, Liu B, Shi J, Zhao S, Xu K, Sun L J Pers Med. 2022; 12(9).

PMID: 36143288 PMC: 9504640. DOI: 10.3390/jpm12091503.


Developmental genomics of limb malformations: Allelic series in association with gene dosage effects contribute to the clinical variability.

Duan R, Hijazi H, Gulec E, Eker H, Costa S, Sahin Y HGG Adv. 2022; 3(4):100132.

PMID: 36035248 PMC: 9403727. DOI: 10.1016/j.xhgg.2022.100132.


Identification of Novel Variants in a Cohort of Congenital Contractural Arachnodactyly.

Sun L, Huang Y, Zhao S, Zhong W, Shi J, Guo Y Front Genet. 2022; 13:804202.

PMID: 35360850 PMC: 8960307. DOI: 10.3389/fgene.2022.804202.


PhenoApt leverages clinical expertise to prioritize candidate genes via machine learning.

Chen Z, Zheng Y, Yang Y, Huang Y, Zhao S, Zhao H Am J Hum Genet. 2022; 109(2):270-281.

PMID: 35063063 PMC: 8874150. DOI: 10.1016/j.ajhg.2021.12.008.

References
1.
Dai L, Liu D, Song M, Xu X, Xiong G, Yang K . Mutations in the homeodomain of HOXD13 cause syndactyly type 1-c in two Chinese families. PLoS One. 2014; 9(5):e96192. PMC: 4006867. DOI: 10.1371/journal.pone.0096192. View

2.
Foldynova-Trantirkova S, Wilcox W, Krejci P . Sixteen years and counting: the current understanding of fibroblast growth factor receptor 3 (FGFR3) signaling in skeletal dysplasias. Hum Mutat. 2011; 33(1):29-41. PMC: 3240715. DOI: 10.1002/humu.21636. View

3.
Wang K, Zhao S, Liu B, Zhang Q, Li Y, Liu J . Perturbations of BMP/TGF-β and VEGF/VEGFR signalling pathways in non-syndromic sporadic brain arteriovenous malformations (BAVM). J Med Genet. 2018; 55(10):675-684. PMC: 6161649. DOI: 10.1136/jmedgenet-2017-105224. View

4.
Pignatti E, Zeller R, Zuniga A . To BMP or not to BMP during vertebrate limb bud development. Semin Cell Dev Biol. 2014; 32:119-27. DOI: 10.1016/j.semcdb.2014.04.004. View

5.
Al Kaissi A, Kenis V, Melchenko E, Ben Chehida F, Ganger R, Klaushofer K . Corrections of lower limb deformities in patients with diastrophic dysplasia. Orthop Surg. 2014; 6(4):274-9. PMC: 6583372. DOI: 10.1111/os.12146. View