Structure and Oligonucleotide Binding Efficiency of Differently Prepared Click Chemistry-Type DNA Microarray Slides Based on 3-Azidopropyltrimethoxysilane

Overview

Journal Materials (Basel)

Publisher MDPI

Date 2021 Jun 2

PMID 34073476

Authors

Emilia Frydrych-Tomczak

Tomasz Ratajczak

Lukasz Koscinski

Agnieszka Ranecka

Natalia Michalak

Tadeusz Lucinski

Hieronim Maciejewski

Stefan Jurga

Mikolaj Lewandowski

Marcin K Chmielewski

Affiliations

Soon will be listed here.

Abstract

The structural characterization of glass slides surface-modified with 3-azidopropyltrimethoxysilane and used for anchoring nucleic acids, resulting in the so-called DNA microarrays, is presented. Depending on the silanization conditions, the slides were found to show different oligonucleotide binding efficiency, thus, an attempt was made to correlate this efficiency with the structural characteristics of the silane layers. Atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS) and X-ray reflectometry (XRR) measurements provided information on the surface topography, chemical composition and thickness of the silane films, respectively. The surface for which the best oligonucleotides binding efficiency is observed, has been found to consist of a densely-packed silane layer, decorated with a high-number of additional clusters that are believed to host exposed azide groups.

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