Genome-wide Association Mapping in Maize: Status and Prospects

Overview

Journal 3 Biotech

Publisher Springer

Specialty Biotechnology

Date 2021 May 10

PMID 33968587

Citations 17

Authors

Kumari Shikha

J P Shahi

M T Vinayan

P H Zaidi

A K Singh

B Sinha

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-021-02799-4.

Citing Articles

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Genetic architecture of kernel-related traits in sweet and waxy maize revealed by genome-wide association analysis.

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Understanding grain development in the Poaceae family by comparing conserved and distinctive pathways through omics studies in wheat and maize.

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Dissection of Common Rust Resistance in Tropical Maize Multiparent Population through GWAS and Linkage Studies.

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Genetic Diversity and Population Structure of Maize ( L.) Inbred Lines in Association with Phenotypic and Grain Qualitative Traits Using SSR Genotyping.

Patel R, Memon J, Kumar S, Patel D, Sakure A, Patel M Plants (Basel). 2024; 13(6).

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References

Visscher P, Brown M, McCarthy M, Yang J . Five years of GWAS discovery. Am J Hum Genet. 2012; 90(1):7-24. PMC: 3257326. DOI: 10.1016/j.ajhg.2011.11.029. View

Kong X, Pan J, Zhang M, Xing X, Zhou Y, Liu Y . ZmMKK4, a novel group C mitogen-activated protein kinase kinase in maize (Zea mays), confers salt and cold tolerance in transgenic Arabidopsis. Plant Cell Environ. 2011; 34(8):1291-303. DOI: 10.1111/j.1365-3040.2011.02329.x. View

Sowinski P, Rudzinska-Langwald A, Adamczyk J, Kubica I, Fronk J . Recovery of maize seedling growth, development and photosynthetic efficiency after initial growth at low temperature. J Plant Physiol. 2005; 162(1):67-80. DOI: 10.1016/j.jplph.2004.03.006. View

Yang J, Yeh C, Ramamurthy R, Qi X, Fernando R, Dekkers J . Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize. G3 (Bethesda). 2018; 8(11):3567-3575. PMC: 6222574. DOI: 10.1534/g3.118.200636. View

Yang Q, Li Z, Li W, Ku L, Wang C, Ye J . CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize. Proc Natl Acad Sci U S A. 2013; 110(42):16969-74. PMC: 3801022. DOI: 10.1073/pnas.1310949110. View

Zila C, Samayoa L, Santiago R, Butron A, Holland J . A genome-wide association study reveals genes associated with fusarium ear rot resistance in a maize core diversity panel. G3 (Bethesda). 2013; 3(11):2095-104. PMC: 3815068. DOI: 10.1534/g3.113.007328. View

Curtin S, Tiffin P, Guhlin J, Trujillo D, Burghart L, Atkins P . Validating Genome-Wide Association Candidates Controlling Quantitative Variation in Nodulation. Plant Physiol. 2017; 173(2):921-931. PMC: 5291020. DOI: 10.1104/pp.16.01923. View

Zhao X, Liu Y, Wu W, Li Y, Luo L, Lan Y . Genome-wide association analysis of lead accumulation in maize. Mol Genet Genomics. 2017; 293(3):615-622. DOI: 10.1007/s00438-017-1411-4. View

Yu Y, Zhang H, Li W, Mu C, Zhang F, Wang L . Genome-wide analysis and environmental response profiling of the FK506-binding protein gene family in maize (Zea mays L.). Gene. 2012; 498(2):212-22. DOI: 10.1016/j.gene.2012.01.094. View

10.

Belo A, Zheng P, Luck S, Shen B, Meyer D, Li B . Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize. Mol Genet Genomics. 2007; 279(1):1-10. DOI: 10.1007/s00438-007-0289-y. View

11.

Zhang Y, Wan J, He L, Lan H, Li L . Genome-Wide Association Analysis of Plant Height Using the Maize F1 Population. Plants (Basel). 2019; 8(10). PMC: 6843250. DOI: 10.3390/plants8100432. View

12.

Mazaheri M, Heckwolf M, Vaillancourt B, Gage J, Burdo B, Heckwolf S . Genome-wide association analysis of stalk biomass and anatomical traits in maize. BMC Plant Biol. 2019; 19(1):45. PMC: 6357476. DOI: 10.1186/s12870-019-1653-x. View

13.

Klein R, Zeiss C, Chew E, Tsai J, Sackler R, Haynes C . Complement factor H polymorphism in age-related macular degeneration. Science. 2005; 308(5720):385-9. PMC: 1512523. DOI: 10.1126/science.1109557. View

14.

Wang H, Xu S, Fan Y, Liu N, Zhan W, Liu H . Beyond pathways: genetic dissection of tocopherol content in maize kernels by combining linkage and association analyses. Plant Biotechnol J. 2018; 16(8):1464-1475. PMC: 6041443. DOI: 10.1111/pbi.12889. View

15.

Galli G, Alves F, Morosini J, Fritsche-Neto R . On the usefulness of parental lines GWAS for predicting low heritability traits in tropical maize hybrids. PLoS One. 2020; 15(2):e0228724. PMC: 7006934. DOI: 10.1371/journal.pone.0228724. View

16.

Borevitz J, Nordborg M . The impact of genomics on the study of natural variation in Arabidopsis. Plant Physiol. 2003; 132(2):718-25. PMC: 523862. DOI: 10.1104/pp.103.023549. View

17.

Riva-Roveda L, Escale B, Giauffret C, Perilleux C . Maize plants can enter a standby mode to cope with chilling stress. BMC Plant Biol. 2016; 16(1):212. PMC: 5050578. DOI: 10.1186/s12870-016-0909-y. View

18.

Kaler A, Gillman J, Beissinger T, Purcell L . Comparing Different Statistical Models and Multiple Testing Corrections for Association Mapping in Soybean and Maize. Front Plant Sci. 2020; 10:1794. PMC: 7052329. DOI: 10.3389/fpls.2019.01794. View

19.

Flint-Garcia S, Thornsberry J, Buckler 4th E . Structure of linkage disequilibrium in plants. Annu Rev Plant Biol. 2003; 54:357-74. DOI: 10.1146/annurev.arplant.54.031902.134907. View

20.

Cooper J, Rice B, Shenstone E, Lipka A, Jamann T . Genome-Wide Analysis and Prediction of Resistance to Goss's Wilt in Maize. Plant Genome. 2019; 12(2). DOI: 10.3835/plantgenome2018.06.0045. View