» Articles » PMID: 33870144

Hidden Suppressive Interactions Are Common in Higher-order Drug Combinations

Overview
Journal iScience
Publisher Cell Press
Date 2021 Apr 19
PMID 33870144
Citations 2
Authors
Affiliations
Soon will be listed here.
Abstract

The rapid increase of multi-drug resistant bacteria has led to a greater emphasis on multi-drug combination treatments. However, some combinations can be suppressive-that is, bacteria grow faster in some drug combinations than when treated with a single drug. Typically, when studying interactions, the overall effect of the combination is only compared with the single-drug effects. However, doing so could miss "hidden" cases of suppression, which occur when the highest order is suppressive compared with a lower-order combination but not to a single drug. We examined an extensive dataset of 5-drug combinations and all lower-order-single, 2-, 3-, and 4-drug-combinations. We found that a majority of all combinations-54%-contain hidden suppression. Examining hidden interactions is critical to understanding the architecture of higher-order interactions and can substantially affect our understanding and predictions of the evolution of antibiotic resistance under multi-drug treatments.

Citing Articles

Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis.

Chitra U, Arnold B, Raphael B Nat Commun. 2025; 16(1):1711.

PMID: 39962081 PMC: 11833126. DOI: 10.1038/s41467-025-56986-5.


Environment by environment interactions (ExE) differ across genetic backgrounds (ExExG).

Schmidlin K, Ogbunugafor C, Alexander S, Geiler-Samerotte K bioRxiv. 2024; .

PMID: 38766025 PMC: 11100745. DOI: 10.1101/2024.05.08.593194.


The evolution of resistance to synergistic multi-drug combinations is more complex than evolving resistance to each individual drug component.

Lozano-Huntelman N, Bullivant A, Chacon-Barahona J, Valencia A, Ida N, Zhou A Evol Appl. 2023; 16(12):1901-1920.

PMID: 38143903 PMC: 10739078. DOI: 10.1111/eva.13608.

References
1.
Morimoto M, Shimakawa S, Hashimoto T, Kitaoka T, Kyotani S . Marked efficacy of combined three-drug therapy (Sodium Valproate, Topiramate and Stiripentol) in a patient with Dravet syndrome. J Clin Pharm Ther. 2017; 43(4):571-573. DOI: 10.1111/jcpt.12659. View

2.
Liu J, Gefen O, Ronin I, Bar-Meir M, Balaban N . Effect of tolerance on the evolution of antibiotic resistance under drug combinations. Science. 2020; 367(6474):200-204. DOI: 10.1126/science.aay3041. View

3.
Bendixsen D, Ostman B, Hayden E . Negative Epistasis in Experimental RNA Fitness Landscapes. J Mol Evol. 2017; 85(5-6):159-168. DOI: 10.1007/s00239-017-9817-5. View

4.
Wood K, Cluzel P . Trade-offs between drug toxicity and benefit in the multi-antibiotic resistance system underlie optimal growth of E. coli. BMC Syst Biol. 2012; 6:48. PMC: 3462682. DOI: 10.1186/1752-0509-6-48. View

5.
Chevereau G, Bollenbach T . Systematic discovery of drug interaction mechanisms. Mol Syst Biol. 2015; 11(4):807. PMC: 4422561. DOI: 10.15252/msb.20156098. View