Hidden Suppressive Interactions Are Common in Higher-order Drug Combinations
Overview
Authors
Affiliations
The rapid increase of multi-drug resistant bacteria has led to a greater emphasis on multi-drug combination treatments. However, some combinations can be suppressive-that is, bacteria grow faster in some drug combinations than when treated with a single drug. Typically, when studying interactions, the overall effect of the combination is only compared with the single-drug effects. However, doing so could miss "hidden" cases of suppression, which occur when the highest order is suppressive compared with a lower-order combination but not to a single drug. We examined an extensive dataset of 5-drug combinations and all lower-order-single, 2-, 3-, and 4-drug-combinations. We found that a majority of all combinations-54%-contain hidden suppression. Examining hidden interactions is critical to understanding the architecture of higher-order interactions and can substantially affect our understanding and predictions of the evolution of antibiotic resistance under multi-drug treatments.
Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis.
Chitra U, Arnold B, Raphael B Nat Commun. 2025; 16(1):1711.
PMID: 39962081 PMC: 11833126. DOI: 10.1038/s41467-025-56986-5.
Environment by environment interactions (ExE) differ across genetic backgrounds (ExExG).
Schmidlin K, Ogbunugafor C, Alexander S, Geiler-Samerotte K bioRxiv. 2024; .
PMID: 38766025 PMC: 11100745. DOI: 10.1101/2024.05.08.593194.
Lozano-Huntelman N, Bullivant A, Chacon-Barahona J, Valencia A, Ida N, Zhou A Evol Appl. 2023; 16(12):1901-1920.
PMID: 38143903 PMC: 10739078. DOI: 10.1111/eva.13608.