» Articles » PMID: 33798439

The Next Horizon in Precision Oncology: Proteogenomics to Inform Cancer Diagnosis and Treatment

Overview
Journal Cell
Publisher Cell Press
Specialty Cell Biology
Date 2021 Apr 2
PMID 33798439
Citations 73
Authors
Affiliations
Soon will be listed here.
Abstract

When it comes to precision oncology, proteogenomics may provide better prospects to the clinical characterization of tumors, help make a more accurate diagnosis of cancer, and improve treatment for patients with cancer. This perspective describes the significant contributions of The Cancer Genome Atlas and the Clinical Proteomic Tumor Analysis Consortium to precision oncology and makes the case that proteogenomics needs to be fully integrated into clinical trials and patient care in order for precision oncology to deliver the right cancer treatment to the right patient at the right dose and at the right time.

Citing Articles

Proteogenomic characterisation of primary oral cancer unveils extracellular matrix remodelling and immunosuppressive microenvironment linked to lymph node metastasis.

Liu Y, Yang Z, Pu J, Zhong J, Khoo U, Su Y Clin Transl Med. 2025; 15(3):e70261.

PMID: 40038875 PMC: 11879901. DOI: 10.1002/ctm2.70261.


A novel classification method for LUAD that guides personalized immunotherapy on the basis of the cross-talk of coagulation- and macrophage-related genes.

Li Z, Chen L, Wei Z, Liu H, Zhang L, Huang F Front Immunol. 2025; 16:1518102.

PMID: 40018029 PMC: 11866059. DOI: 10.3389/fimmu.2025.1518102.


Proteogenomic characterization of highly enriched viable leukemic blasts in acute myeloid leukemia: A SWOG report.

Naru J, Othus M, Lin C, Biernacki M, Bleakley M, Chauncey T EJHaem. 2024; 5(6):1243-1251.

PMID: 39691254 PMC: 11647701. DOI: 10.1002/jha2.1041.


π-HuB: the proteomic navigator of the human body.

He F, Aebersold R, Baker M, Bian X, Bo X, Chan D Nature. 2024; 636(8042):322-331.

PMID: 39663494 DOI: 10.1038/s41586-024-08280-5.


A hypoxia-activated and microenvironment-remodeling nanoplatform for multifunctional imaging and potentiated immunotherapy of cancer.

Song J, Wang H, Meng X, Li W, Qi J Nat Commun. 2024; 15(1):10395.

PMID: 39613774 PMC: 11607447. DOI: 10.1038/s41467-024-53906-x.


References
1.
Zhang B, Whiteaker J, Hoofnagle A, Baird G, Rodland K, Paulovich A . Clinical potential of mass spectrometry-based proteogenomics. Nat Rev Clin Oncol. 2018; 16(4):256-268. PMC: 6448780. DOI: 10.1038/s41571-018-0135-7. View

2.
Mertins P, Mani D, Ruggles K, Gillette M, Clauser K, Wang P . Proteogenomics connects somatic mutations to signalling in breast cancer. Nature. 2016; 534(7605):55-62. PMC: 5102256. DOI: 10.1038/nature18003. View

3.
Carr S, Abbatiello S, Ackermann B, Borchers C, Domon B, Deutsch E . Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach. Mol Cell Proteomics. 2014; 13(3):907-17. PMC: 3945918. DOI: 10.1074/mcp.M113.036095. View

4.
Lange V, Picotti P, Domon B, Aebersold R . Selected reaction monitoring for quantitative proteomics: a tutorial. Mol Syst Biol. 2008; 4:222. PMC: 2583086. DOI: 10.1038/msb.2008.61. View

5.
Doroshow D, Doroshow J . Genomics and the History of Precision Oncology. Surg Oncol Clin N Am. 2019; 29(1):35-49. PMC: 6878897. DOI: 10.1016/j.soc.2019.08.003. View