Goclowski C, Jakiela J, Collins T, Hiltemann S, Howells M, Loach M
Gigascience. 2025; 14.
PMID: 39775842
PMC: 11707610.
DOI: 10.1093/gigascience/giae107.
Ding X, Zhang L, Fan M, Li L
Brief Bioinform. 2024; 25(5).
PMID: 39167797
PMC: 11337220.
DOI: 10.1093/bib/bbae410.
Curion F, Rich-Griffin C, Agarwal D, Ouologuem S, Rue-Albrecht K, May L
Genome Biol. 2024; 25(1):181.
PMID: 38978088
PMC: 11229213.
DOI: 10.1186/s13059-024-03322-7.
Sethi R, Ang K, Li M, Long Y, Ling J, Chen J
Nat Commun. 2024; 15(1):5600.
PMID: 38961061
PMC: 11222513.
DOI: 10.1038/s41467-024-48188-2.
Pan L, Mou T, Huang Y, Hong W, Yu M, Li X
Mol Biol Evol. 2023; 40(12).
PMID: 38091963
PMC: 10752348.
DOI: 10.1093/molbev/msad267.
ShIVA: a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data.
Aussel R, Asif M, Chenag S, Jaeger S, Milpied P, Spinelli L
Sci Rep. 2023; 13(1):14377.
PMID: 37658061
PMC: 10474127.
DOI: 10.1038/s41598-023-40959-z.
A Roadmap for the Human Gut Cell Atlas.
Zilbauer M, James K, Kaur M, Pott S, Li Z, Burger A
Nat Rev Gastroenterol Hepatol. 2023; 20(9):597-614.
PMID: 37258747
PMC: 10527367.
DOI: 10.1038/s41575-023-00784-1.
Single-Cell Multiomics.
Flynn E, Almonte-Loya A, Fragiadakis G
Annu Rev Biomed Data Sci. 2023; 6:313-337.
PMID: 37159875
PMC: 11146013.
DOI: 10.1146/annurev-biodatasci-020422-050645.
Applications of single-cell RNA sequencing in drug discovery and development.
Van de Sande B, Lee J, Mutasa-Gottgens E, Naughton B, Bacon W, Manning J
Nat Rev Drug Discov. 2023; 22(6):496-520.
PMID: 37117846
PMC: 10141847.
DOI: 10.1038/s41573-023-00688-4.
Extracellularly Detectable Electrochemical Signals of Living Cells Originate from Metabolic Reactions.
Koo K, Kim C, Kim H, Cho Y, Suhito I, Kim T
Adv Sci (Weinh). 2023; 10(9):e2207084.
PMID: 36737855
PMC: 10037963.
DOI: 10.1002/advs.202207084.
Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01B malaria vaccine.
Nielsen C, Barrett J, Davis C, Fallon J, Goh C, Michell A
JCI Insight. 2023; 8(2).
PMID: 36692019
PMC: 9977309.
DOI: 10.1172/jci.insight.163859.
Translational opportunities of single-cell biology in atherosclerosis.
de Winther M, Back M, Evans P, Gomez D, Goncalves I, Jorgensen H
Eur Heart J. 2022; 44(14):1216-1230.
PMID: 36478058
PMC: 10120164.
DOI: 10.1093/eurheartj/ehac686.
Intercellular communication analysis of the human retinal pigment epithelial and choroidal cells predicts pathways associated with aging, cellular senescence and age-related macular degeneration.
Dhirachaikulpanich D, Lagger C, Chatsirisupachai K, de Magalhaes J, Paraoan L
Front Aging Neurosci. 2022; 14:1016293.
PMID: 36408112
PMC: 9669800.
DOI: 10.3389/fnagi.2022.1016293.
SingleCAnalyzer: Interactive Analysis of Single Cell RNA-Seq Data on the Cloud.
Prieto C, Barrios D, Villaverde A
Front Bioinform. 2022; 2:793309.
PMID: 36304292
PMC: 9580930.
DOI: 10.3389/fbinf.2022.793309.
Bioinformatics roadmap for therapy selection in cancer genomics.
Jimenez-Santos M, Garcia-Martin S, Fustero-Torre C, Di Domenico T, Gomez-Lopez G, Al-Shahrour F
Mol Oncol. 2022; 16(21):3881-3908.
PMID: 35811332
PMC: 9627786.
DOI: 10.1002/1878-0261.13286.
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.
Nucleic Acids Res. 2022; 50(W1):W345-W351.
PMID: 35446428
PMC: 9252830.
DOI: 10.1093/nar/gkac247.
Expression Atlas update: gene and protein expression in multiple species.
Moreno P, Fexova S, George N, Manning J, Miao Z, Mohammed S
Nucleic Acids Res. 2021; 50(D1):D129-D140.
PMID: 34850121
PMC: 8728300.
DOI: 10.1093/nar/gkab1030.
Asc-Seurat: analytical single-cell Seurat-based web application.
Pereira W, Almeida F, Conde D, Balmant K, Triozzi P, Schmidt H
BMC Bioinformatics. 2021; 22(1):556.
PMID: 34794383
PMC: 8600690.
DOI: 10.1186/s12859-021-04472-2.
Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses.
Garg M, Li X, Moreno P, Papatheodorou I, Shu Y, Brazma A
Sci Rep. 2021; 11(1):20833.
PMID: 34675242
PMC: 8531356.
DOI: 10.1038/s41598-021-00121-z.
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.
Tekman M, Batut B, Ostrovsky A, Antoniewski C, Clements D, Ramirez F
Gigascience. 2020; 9(10).
PMID: 33079170
PMC: 7574357.
DOI: 10.1093/gigascience/giaa102.