» Articles » PMID: 33779543

Global Epistasis Emerges from a Generic Model of a Complex Trait

Overview
Journal Elife
Specialty Biology
Date 2021 Mar 29
PMID 33779543
Citations 44
Authors
Affiliations
Soon will be listed here.
Abstract

Epistasis between mutations can make adaptation contingent on evolutionary history. Yet despite widespread 'microscopic' epistasis between the mutations involved, microbial evolution experiments show consistent patterns of fitness increase between replicate lines. Recent work shows that this consistency is driven in part by global patterns of diminishing-returns and increasing-costs epistasis, which make mutations systematically less beneficial (or more deleterious) on fitter genetic backgrounds. However, the origin of this 'global' epistasis remains unknown. Here, we show that diminishing-returns and increasing-costs epistasis emerge generically as a consequence of pervasive microscopic epistasis. Our model predicts a specific quantitative relationship between the magnitude of global epistasis and the stochastic effects of microscopic epistasis, which we confirm by reanalyzing existing data. We further show that the distribution of fitness effects takes on a universal form when epistasis is widespread and introduce a novel fitness landscape model to show how phenotypic evolution can be repeatable despite sequence-level stochasticity.

Citing Articles

Epistatic hotspots organize antibody fitness landscape and boost evolvability.

Schulz S, Tan T, Wu N, Wang S Proc Natl Acad Sci U S A. 2025; 122(2):e2413884122.

PMID: 39773024 PMC: 11745389. DOI: 10.1073/pnas.2413884122.


Soft Modes as a Predictive Framework for Low Dimensional Biological Systems across Scales.

Russo C, Husain K, Murugan A ArXiv. 2025; .

PMID: 39764393 PMC: 11702803.


Epistasis and cryptic QTL identified using modified bulk segregant analysis of copper resistance in budding yeast.

Buzby C, Plavskin Y, Sartori F, Tong Q, Vail J, Siegal M bioRxiv. 2024; .

PMID: 39605464 PMC: 11601411. DOI: 10.1101/2024.10.28.620582.


Higher-order epistasis within Pol II trigger loop haplotypes.

Duan B, Qiu C, Lockless S, Sze S, Kaplan C Genetics. 2024; .

PMID: 39446980 PMC: 11631520. DOI: 10.1093/genetics/iyae172.


Extreme positive epistasis for fitness in monosomic yeast strains.

Tutaj H, Tomala K, Pirog A, Marszalek M, Korona R Elife. 2024; 12.

PMID: 39417696 PMC: 11486488. DOI: 10.7554/eLife.87455.


References
1.
Starr T, Thornton J . Epistasis in protein evolution. Protein Sci. 2016; 25(7):1204-18. PMC: 4918427. DOI: 10.1002/pro.2897. View

2.
Lyons D, Zou Z, Xu H, Zhang J . Idiosyncratic epistasis creates universals in mutational effects and evolutionary trajectories. Nat Ecol Evol. 2020; 4(12):1685-1693. PMC: 7710555. DOI: 10.1038/s41559-020-01286-y. View

3.
Husain K, Murugan A . Physical Constraints on Epistasis. Mol Biol Evol. 2020; 37(10):2865-2874. DOI: 10.1093/molbev/msaa124. View

4.
Draghi J, Plotkin J . Selection biases the prevalence and type of epistasis along adaptive trajectories. Evolution. 2013; 67(11):3120-31. DOI: 10.1111/evo.12192. View

5.
Weinreich D, Lan Y, Wylie C, Heckendorn R . Should evolutionary geneticists worry about higher-order epistasis?. Curr Opin Genet Dev. 2013; 23(6):700-7. PMC: 4313208. DOI: 10.1016/j.gde.2013.10.007. View