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Stationary Ca Nanodomains in the Presence of Buffers with Two Binding Sites

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 2021 Mar 27
PMID 33771472
Citations 2
Authors
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Abstract

We examine closed-form approximations for the equilibrium Ca and buffer concentrations near a point Ca source representing a Ca channel, in the presence of a mobile buffer with two Ca binding sites activated sequentially and possessing distinct binding affinities and kinetics. This allows us to model the impact on Ca nanodomains of realistic endogenous Ca buffers characterized by cooperative Ca binding, such as calretinin. The approximations we present involve a combination or rational and exponential functions, whose parameters are constrained using the series interpolation method that we recently introduced for the case of simpler Ca buffers with a single Ca binding site. We conduct extensive parameter sensitivity analysis and show that the obtained closed-form approximations achieve reasonable qualitative accuracy for a wide range of buffer's Ca binding properties and other relevant model parameters. In particular, the accuracy of the derived approximants exceeds that of the rapid buffering approximation in large portions of the relevant parameter space.

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References
1.
Bertram R, Smith G, Sherman A . Modeling study of the effects of overlapping Ca2+ microdomains on neurotransmitter release. Biophys J. 1999; 76(2):735-50. PMC: 1300078. DOI: 10.1016/S0006-3495(99)77240-1. View

2.
Gordon P, Muratov C, Shvartsman S . Local accumulation times for source, diffusion, and degradation models in two and three dimensions. J Chem Phys. 2013; 138(10):104121. DOI: 10.1063/1.4793985. View

3.
Matveev V, Bertram R, Sherman A . Calcium cooperativity of exocytosis as a measure of Ca²+ channel domain overlap. Brain Res. 2011; 1398:126-38. PMC: 3181473. DOI: 10.1016/j.brainres.2011.05.011. View

4.
Wang L, Augustine G . Presynaptic nanodomains: a tale of two synapses. Front Cell Neurosci. 2015; 8:455. PMC: 4306312. DOI: 10.3389/fncel.2014.00455. View

5.
Naraghi M, Neher E . Linearized buffered Ca2+ diffusion in microdomains and its implications for calculation of [Ca2+] at the mouth of a calcium channel. J Neurosci. 1997; 17(18):6961-73. PMC: 6573285. View