Molecular Mapping of Quantitative Disease Resistance Loci for Soybean Partial Resistance to Phytophthora Sansomeana

Overview

Journal Theor Appl Genet

Publisher Springer

Specialty Genetics

Date 2021 Mar 15

PMID 33721030

Citations 5

Authors

Feng Lin

Wenlong Li

Austin G McCoy

Xuan Gao

Paul J Collins

Na Zhang

Zixiang Wen

Sizhe Cao

Shabir H Wani

Cuihua Gu

Martin I Chilvers

Dechun Wang

Affiliations

Soon will be listed here.

Abstract

Two soybean QDRL were identified with additive interaction to P. sansomeana isolate MPS17-22. Further analyses uncovered four interaction patterns between the two QDRL and seven additional P. sansomeana isolates. Phytophthora sansomeana is a recently recognized species that contributes to root rot in soybean. Previous studies indicated that P. sansomeana is widely distributed among soybean growing regions and has a much wider host range than P. sojae, a well-known pathogen of soybean. Unlike P. sojae, no known disease resistance genes have been documented that can effectively control P. sansomeana. Therefore, it is important to identify resistance that can be quickly integrated into future soybean varieties. E13901 is an improved soybean line that confers partial resistance to P. sansomeana. A mapping population of 228 F4:5 families was developed from a cross between E13901 and a susceptible improved soybean variety E13390. Using a composite interval mapping method, two quantitative disease resistance loci (QDRL) were identified on Chromosomes 5 (designated qPsan5.1) and 16 (designated qPsan16.1), respectively. qPsan5.1 was mapped at 54.71 cM between Gm05_32565157_T_C and Gm05_32327497_T_C. qPsan5.1 was contributed by E13390 and explained about 6% of the disease resistance variation. qPsan16.1 was located at 39.01 cM between Gm16_35700223_G_T and Gm16_35933600/ Gm16_35816475. qPsan16.1 was from E13901 and could explain 5.5% of partial disease resistance. Further analysis indicated an additive interaction of qPsan5.1 and qPsan16.1 against P. sansomeana isolate MPS17-22. Marker assisted resistance spectrum analysis and progeny tests verified the two QDRL and their interaction patterns with other P. sansomeana isolates. Both QDRL can be quickly integrated into soybean varieties using marker assisted selection.

Citing Articles

DNA methylation analysis reveals local changes in resistant and susceptible soybean lines in response to Phytophthora sansomeana.

DiBiase C, Cheng X, Lee G, Moore R, McCoy A, Chilvers M G3 (Bethesda). 2024; 14(10).

PMID: 39141590 PMC: 11457093. DOI: 10.1093/g3journal/jkae191.

Identification and molecular mapping of a major gene conferring resistance to Phytophthora sansomeana in soybean 'Colfax'.

Lin F, Salman M, Zhang Z, McCoy A, Li W, Magar R Theor Appl Genet. 2024; 137(3):55.

PMID: 38386094 DOI: 10.1007/s00122-024-04556-6.

Progress and prospectus in genetics and genomics of root and stem rot resistance in soybean ( L.).

Chandra S, Choudhary M, Bagaria P, Nataraj V, Kumawat G, Choudhary J Front Genet. 2022; 13:939182.

PMID: 36452161 PMC: 9702362. DOI: 10.3389/fgene.2022.939182.

Identification and characterization of pleiotropic and epistatic QDRL conferring partial resistance to Pythium irregulare and P. sylvaticum in soybean.

Lin F, Li W, McCoy A, Wang K, Jacobs J, Zhang N Theor Appl Genet. 2022; 135(10):3571-3582.

PMID: 36087141 DOI: 10.1007/s00122-022-04201-0.

Breeding for disease resistance in soybean: a global perspective.

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References

Afzal A, Wood A, Lightfoot D . Plant receptor-like serine threonine kinases: roles in signaling and plant defense. Mol Plant Microbe Interact. 2008; 21(5):507-17. DOI: 10.1094/MPMI-21-5-0507. View

Bales C, Zhang G, Liu M, Mensah C, Gu C, Song Q . Mapping soybean aphid resistance genes in PI 567598B. Theor Appl Genet. 2013; 126(8):2081-91. DOI: 10.1007/s00122-013-2120-y. View

Bienapfl J, Malvick D, Percich J . Specific molecular detection of Phytophthora sojae using conventional and real-time PCR. Fungal Biol. 2011; 115(8):733-40. DOI: 10.1016/j.funbio.2011.05.007. View

Churchill G, Doerge R . Empirical threshold values for quantitative trait mapping. Genetics. 1994; 138(3):963-71. PMC: 1206241. DOI: 10.1093/genetics/138.3.963. View

Dorrance A, Robertson A, Cianzo S, Giesler L, Grau C, Draper M . Integrated Management Strategies for Phytophthora sojae Combining Host Resistance and Seed Treatments. Plant Dis. 2019; 93(9):875-882. DOI: 10.1094/PDIS-93-9-0875. View

Gibson G . The environmental contribution to gene expression profiles. Nat Rev Genet. 2008; 9(8):575-81. DOI: 10.1038/nrg2383. View

Hacker C, Brasier C, Buck K . A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J Gen Virol. 2005; 86(Pt 5):1561-1570. DOI: 10.1099/vir.0.80808-0. View

Lee S, Mian M, Sneller C, Wang H, Dorrance A, McHale L . Joint linkage QTL analyses for partial resistance to Phytophthora sojae in soybean using six nested inbred populations with heterogeneous conditions. Theor Appl Genet. 2013; 127(2):429-44. DOI: 10.1007/s00122-013-2229-z. View

Li L, Lin F, Wang W, Ping J, Fitzgerald J, Zhao M . Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae in soybean. Theor Appl Genet. 2016; 129(12):2379-2386. DOI: 10.1007/s00122-016-2777-0. View

10.

Lin F, Zhao M, Ping J, Johnson A, Zhang B, Abney T . Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI 567139B. Theor Appl Genet. 2013; 126(8):2177-85. DOI: 10.1007/s00122-013-2127-4. View

11.

Malvick D, Grunden E . Traits of Soybean-Infecting Phytophthora Populations from Illinois Agricultural Fields. Plant Dis. 2019; 88(10):1139-1145. DOI: 10.1094/PDIS.2004.88.10.1139. View

12.

Marcel T, Gorguet B, Ta M, Kohutova Z, Vels A, Niks R . Isolate specificity of quantitative trait loci for partial resistance of barley to Puccinia hordei confirmed in mapping populations and near-isogenic lines. New Phytol. 2007; 177(3):743-755. DOI: 10.1111/j.1469-8137.2007.02298.x. View

13.

Nelson R, Wiesner-Hanks T, Wisser R, Balint-Kurti P . Navigating complexity to breed disease-resistant crops. Nat Rev Genet. 2017; 19(1):21-33. DOI: 10.1038/nrg.2017.82. View

14.

Poland J, Balint-Kurti P, Wisser R, Pratt R, Nelson R . Shades of gray: the world of quantitative disease resistance. Trends Plant Sci. 2008; 14(1):21-9. DOI: 10.1016/j.tplants.2008.10.006. View

15.

Rojas J, Miles T, Coffey M, Martin F, Chilvers M . Development and Application of qPCR and RPA Genus- and Species-Specific Detection of Phytophthora sojae and P. sansomeana Root Rot Pathogens of Soybean. Plant Dis. 2019; 101(7):1171-1181. DOI: 10.1094/PDIS-09-16-1225-RE. View

16.

Schmutz J, Cannon S, Schlueter J, Ma J, Mitros T, Nelson W . Genome sequence of the palaeopolyploid soybean. Nature. 2010; 463(7278):178-83. DOI: 10.1038/nature08670. View

17.

Schneider R, Rolling W, Song Q, Cregan P, Dorrance A, McHale L . Genome-wide association mapping of partial resistance to Phytophthora sojae in soybean plant introductions from the Republic of Korea. BMC Genomics. 2016; 17(1):607. PMC: 4982113. DOI: 10.1186/s12864-016-2918-5. View

18.

Shoemaker R, Schlueter J, Doyle J . Paleopolyploidy and gene duplication in soybean and other legumes. Curr Opin Plant Biol. 2006; 9(2):104-9. DOI: 10.1016/j.pbi.2006.01.007. View

19.

Song Q, Hyten D, Jia G, Quigley C, Fickus E, Nelson R . Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS One. 2013; 8(1):e54985. PMC: 3555945. DOI: 10.1371/journal.pone.0054985. View

20.

Srour A, Afzal A, Blahut-Beatty L, Hemmati N, Simmonds D, Li W . The receptor like kinase at Rhg1-a/Rfs2 caused pleiotropic resistance to sudden death syndrome and soybean cyst nematode as a transgene by altering signaling responses. BMC Genomics. 2012; 13:368. PMC: 3439264. DOI: 10.1186/1471-2164-13-368. View