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3D Segmentation of Lungs with Juxta-pleural Tumor Using the Improved Active Shape Model Approach

Overview
Publisher Sage Publications
Date 2021 Mar 8
PMID 33682776
Citations 2
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Abstract

Background And Objective: At present, there are many methods for pathological lung segmentation. However, there are still two unresolved problems. (1) The search steps in traditional ASM is a least square optimization method, which is sensitive to outlier marker points, and it makes the profile update to the transition area in the middle of normal lung tissue and tumor rather than a true lung contour. (2) If the noise images exist in the training dataset, the corrected shape model cannot be constructed.

Methods: To solve the first problem, we proposed a new ASM algorithm. Firstly, we detected these outlier marker points by a distance method, and then the different searching functions to the abnormal and normal marker points are applied. To solve the second problem, robust principal component analysis (RPCA) of low rank theory can remove noise, so the proposed method combines RPCA instead of PCA with ASM to solve this problem. Low rank decompose for marker points matrix of training dataset and covariance matrix of PCA will be done before segmentation using ASM.

Results: Using the proposed method to segment 122 lung images with juxta-pleural tumors of EMPIRE10 database, got the overlap rate with the gold standard as 94.5%. While the accuracy of ASM based on PCA is only 69.5%.

Conclusions: The results showed that when the noise sample is contained in the training sample set, a good segmentation result for the lungs with juxta-pleural tumors can be obtained by the ASM based on RPCA.

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References
1.
Shi C, Cheng Y, Wang J, Wang Y, Mori K, Tamura S . Low-rank and sparse decomposition based shape model and probabilistic atlas for automatic pathological organ segmentation. Med Image Anal. 2017; 38:30-49. DOI: 10.1016/j.media.2017.02.008. View

2.
Sun S, Bauer C, Beichel R . Automated 3-D segmentation of lungs with lung cancer in CT data using a novel robust active shape model approach. IEEE Trans Med Imaging. 2011; 31(2):449-60. PMC: 3657761. DOI: 10.1109/TMI.2011.2171357. View

3.
van Ginneken B, Frangi A, Staal J, Romeny B, Viergever M . Active shape model segmentation with optimal features. IEEE Trans Med Imaging. 2002; 21(8):924-33. DOI: 10.1109/TMI.2002.803121. View

4.
Li A, Chen D, Wu Z, Sun G, Lin K . Self-supervised sparse coding scheme for image classification based on low rank representation. PLoS One. 2018; 13(6):e0199141. PMC: 6010279. DOI: 10.1371/journal.pone.0199141. View

5.
Murphy K, van Ginneken B, Reinhardt J, Kabus S, Ding K, Deng X . Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge. IEEE Trans Med Imaging. 2011; 30(11):1901-20. DOI: 10.1109/TMI.2011.2158349. View