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Peptide-Protein Interactions: From Drug Design to Supramolecular Biomaterials

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2021 Mar 6
PMID 33668767
Citations 11
Authors
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Abstract

The self-recognition and self-assembly of biomolecules are spontaneous processes that occur in Nature and allow the formation of ordered structures, at the nanoscale or even at the macroscale, under thermodynamic and kinetic equilibrium as a consequence of specific and local interactions. In particular, peptides and peptidomimetics play an elected role, as they may allow a rational approach to elucidate biological mechanisms to develop new drugs, biomaterials, catalysts, or semiconductors. The forces that rule self-recognition and self-assembly processes are weak interactions, such as hydrogen bonding, electrostatic attractions, and van der Waals forces, and they underlie the formation of the secondary structure (e.g., α-helix, β-sheet, polyproline II helix), which plays a key role in all biological processes. Here, we present recent and significant examples whereby design was successfully applied to attain the desired structural motifs toward function. These studies are important to understand the main interactions ruling the biological processes and the onset of many pathologies. The types of secondary structure adopted by peptides during self-assembly have a fundamental importance not only on the type of nano- or macro-structure formed but also on the properties of biomaterials, such as the types of interaction, encapsulation, non-covalent interaction, or covalent interaction, which are ultimately useful for applications in drug delivery.

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References
1.
Gradinaru V, Treweek J, Overton K, Deisseroth K . Hydrogel-Tissue Chemistry: Principles and Applications. Annu Rev Biophys. 2018; 47:355-376. PMC: 6359929. DOI: 10.1146/annurev-biophys-070317-032905. View

2.
Erak M, Bellmann-Sickert K, Els-Heindl S, Beck-Sickinger A . Peptide chemistry toolbox - Transforming natural peptides into peptide therapeutics. Bioorg Med Chem. 2018; 26(10):2759-2765. DOI: 10.1016/j.bmc.2018.01.012. View

3.
Melchionna M, Styan K, Marchesan S . The Unexpected Advantages of Using D-Amino Acids for Peptide Self- Assembly into Nanostructured Hydrogels for Medicine. Curr Top Med Chem. 2016; 16(18):2009-18. PMC: 5374841. DOI: 10.2174/1568026616999160212120302. View

4.
Mondal S, Basavalingappa V, Jacoby G, Shimon L, Beck R, Gazit E . Functional Coiled-Coil-like Assembly by Knob-into-Hole Packing of Single Heptad Repeat. ACS Nano. 2019; 13(11):12630-12637. PMC: 7616943. DOI: 10.1021/acsnano.9b04148. View

5.
Spanopoulou A, Heidrich L, Chen H, Frost C, Hrle D, Malideli E . Designed Macrocyclic Peptides as Nanomolar Amyloid Inhibitors Based on Minimal Recognition Elements. Angew Chem Int Ed Engl. 2018; 57(44):14503-14508. DOI: 10.1002/anie.201802979. View