» Articles » PMID: 33574113

Complete Genome Sequence of Stenotrophomonas Indicatrix DAIF1

Overview
Specialty Microbiology
Date 2021 Feb 12
PMID 33574113
Citations 2
Authors
Affiliations
Soon will be listed here.
Abstract

We present the complete genome of DAIF1, which was isolated from an oligotrophic pond in a water protection area. Whole-genome alignments indicated that strain DAIF1 belongs to the species The whole genome (4,639,375 bp) harbors 4,108 protein-encoding genes, including 3,029 genes with assigned functions.

Citing Articles

Novel insights into insect mediated polystyrene biodegradation through bacterial genome analyses.

Zarra F, Funari R, Cucini C, Nardi F, Carapelli A, Marri L Sci Rep. 2025; 15(1):1047.

PMID: 39774784 PMC: 11707134. DOI: 10.1038/s41598-025-85517-x.


Genome analysis for the identification of genes involved in phenanthrene biodegradation pathway in CPHE1. Phenanthrene mineralization in soils assisted by integrated approaches.

Lara-Moreno A, Merchan F, Morillo E, Zampolli J, Di Gennaro P, Villaverde J Front Bioeng Biotechnol. 2023; 11:1158177.

PMID: 37214282 PMC: 10192627. DOI: 10.3389/fbioe.2023.1158177.

References
1.
Kurtz S, Phillippy A, Delcher A, Smoot M, Shumway M, Antonescu C . Versatile and open software for comparing large genomes. Genome Biol. 2004; 5(2):R12. PMC: 395750. DOI: 10.1186/gb-2004-5-2-r12. View

2.
Chen S, Zhou Y, Chen Y, Gu J . fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018; 34(17):i884-i890. PMC: 6129281. DOI: 10.1093/bioinformatics/bty560. View

3.
Friedrich I, Hollensteiner J, Schneider D, Poehlein A, Hertel R, Daniel R . First Complete Genome Sequences of Janthinobacterium lividum EIF1 and EIF2 and Their Comparative Genome Analysis. Genome Biol Evol. 2020; 12(10):1782-1788. PMC: 7549134. DOI: 10.1093/gbe/evaa148. View

4.
Wick R, Judd L, Gorrie C, Holt K . Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol. 2017; 13(6):e1005595. PMC: 5481147. DOI: 10.1371/journal.pcbi.1005595. View

5.
Richter M, Rossello-Mora R . Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A. 2009; 106(45):19126-31. PMC: 2776425. DOI: 10.1073/pnas.0906412106. View