Yang J, Zhou F, Luo X, Fang Y, Wang X, Liu X
Cell Death Discov. 2025; 11(1):84.
PMID: 40032852
PMC: 11876437.
DOI: 10.1038/s41420-025-02366-3.
Ma F, Ollikainen N, Du H, Braikia F, Cui N, Bianchi A
Nat Commun. 2025; 16(1):2148.
PMID: 40032827
PMC: 11876664.
DOI: 10.1038/s41467-025-57373-w.
Caragine C, Le V, Mustafa M, Diaz B, Morris J, Muller S
Nat Commun. 2025; 16(1):1611.
PMID: 39948336
PMC: 11825950.
DOI: 10.1038/s41467-025-56568-5.
Ray-Jones H, Sung C, Chan L, Haglund A, Artemov P, Della Rosa M
Nat Commun. 2025; 16(1):970.
PMID: 39870618
PMC: 11772589.
DOI: 10.1038/s41467-025-55900-3.
Rao A, Russell A, Segura-Bermudez J, Franz C, Dockery R, Blatnik A
Development. 2025; 152(4).
PMID: 39803985
PMC: 11883283.
DOI: 10.1242/dev.204458.
The Zebrafish Retina and the Evolution of the Onecut-Mediated Pathway in Cell Type Differentiation.
Vassalli Q, Fasano G, Nittoli V, Gagliardi E, Sepe R, Donizetti A
Cells. 2025; 13(24.
PMID: 39768162
PMC: 11675081.
DOI: 10.3390/cells13242071.
Multiple allelic configurations govern long-range Shh enhancer-promoter communication in the embryonic forebrain.
Harke J, Lee J, Nguyen S, Arab A, Rakowiecki S, Hugelier S
Mol Cell. 2024; 84(24):4698-4710.e6.
PMID: 39579767
PMC: 11663103.
DOI: 10.1016/j.molcel.2024.10.042.
Entangled and non-modular enhancer sequences producing independent spatial activities.
Museridze M, Ceolin S, Muhling B, Ramanathan S, Barmina O, Sekhar P
Sci Adv. 2024; 10(47):eadr9856.
PMID: 39565856
PMC: 11578167.
DOI: 10.1126/sciadv.adr9856.
Beyond the heat shock pathway: Heat stress responses in Drosophila development.
Gibbs J, Mei C, Wunderlich Z
Dev Biol. 2024; 518():53-60.
PMID: 39557149
PMC: 11703687.
DOI: 10.1016/j.ydbio.2024.11.003.
Decoding the epigenetics and chromatin loop dynamics of androgen receptor-mediated transcription.
Altintas U, Seo J, Giambartolomei C, Ozturan D, Fortunato B, Nelson G
Nat Commun. 2024; 15(1):9494.
PMID: 39489778
PMC: 11532539.
DOI: 10.1038/s41467-024-53758-5.
A novel interpretable deep learning-based computational framework designed synthetic enhancers with broad cross-species activity.
Li Z, Zhang Y, Peng B, Qin S, Zhang Q, Chen Y
Nucleic Acids Res. 2024; 52(21):13447-13468.
PMID: 39420601
PMC: 11602155.
DOI: 10.1093/nar/gkae912.
Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively.
Zhou J, Guruvayurappan K, Toneyan S, Chen H, Chen A, Koo P
Cell Genom. 2024; 4(11):100672.
PMID: 39406234
PMC: 11605691.
DOI: 10.1016/j.xgen.2024.100672.
Regulatory genome annotation of 33 insect species.
Asma H, Tieke E, Deem K, Rahmat J, Dong T, Huang X
Elife. 2024; 13.
PMID: 39392676
PMC: 11469670.
DOI: 10.7554/eLife.96738.
A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival.
Abassah-Oppong S, Zoia M, Mannion B, Rouco R, Tissieres V, Spurrell C
Nat Commun. 2024; 15(1):8793.
PMID: 39389973
PMC: 11467299.
DOI: 10.1038/s41467-024-53009-7.
A enhancer transcriptionally regulates Wnt signaling dosage to balance homeostasis and tumorigenesis of intestinal epithelia.
Hua X, Zhao C, Tian J, Wang J, Miao X, Zheng G
Elife. 2024; 13.
PMID: 39320349
PMC: 11424096.
DOI: 10.7554/eLife.98238.
EnhancerNet: a predictive model of cell identity dynamics through enhancer selection.
Karin O
Development. 2024; 151(19).
PMID: 39289870
PMC: 11488642.
DOI: 10.1242/dev.202997.
Interpreting cis-regulatory interactions from large-scale deep neural networks.
Toneyan S, Koo P
Nat Genet. 2024; 56(11):2517-2527.
PMID: 39284975
DOI: 10.1038/s41588-024-01923-3.
H3K4me2 distinguishes a distinct class of enhancers during the maternal-to-zygotic transition.
Hurton M, Miller J, Lee M
bioRxiv. 2024; .
PMID: 39253505
PMC: 11383010.
DOI: 10.1101/2024.08.26.609713.
Notch-Dependent Expression of the Gene Is Supported by a Pair of Enhancers with Overlapping Activities.
Monastirioti M, Koltsaki I, Pitsidianaki I, Skafida E, Batsiotos N, Delidakis C
Genes (Basel). 2024; 15(8).
PMID: 39202431
PMC: 11353301.
DOI: 10.3390/genes15081071.
Comprehensive network modeling approaches unravel dynamic enhancer-promoter interactions across neural differentiation.
DeGroat W, Inoue F, Ashuach T, Yosef N, Ahituv N, Kreimer A
Genome Biol. 2024; 25(1):221.
PMID: 39143563
PMC: 11323586.
DOI: 10.1186/s13059-024-03365-w.