Moulin D, Sellam J, Berenbaum F, Guicheux J, Boutet M
Nat Rev Rheumatol. 2025; .
PMID: 40082724
DOI: 10.1038/s41584-025-01223-y.
Yang J, Zheng Z, Jiao Y, Yu K, Bhatara S, Yang X
Nat Methods. 2025; .
PMID: 40074951
DOI: 10.1038/s41592-025-02622-5.
Cho J, Kang M, Park S, Oh J, Ku H, Shin H
J Nephrol. 2025; .
PMID: 40067649
DOI: 10.1007/s40620-025-02233-5.
Chowdhury S, Ferri-Borgogno S, Yang P, Wang W, Peng J, C Mok S
Brief Bioinform. 2025; 26(2).
PMID: 40062614
PMC: 11891659.
DOI: 10.1093/bib/bbaf085.
Yoshihara K, Ito K, Kimura T, Yamamoto Y, Urabe F
Bladder Cancer. 2025; 11(1):23523735251322017.
PMID: 40034247
PMC: 11864234.
DOI: 10.1177/23523735251322017.
Individualized Pooled CRISPR/Cas9 Screenings Identify CDK2 as a Druggable Vulnerability in a Canine Mammary Carcinoma Patient.
Inglebert M, Dettwiler M, He C, Markkanen E, Opitz L, Naguleswaran A
Vet Sci. 2025; 12(2).
PMID: 40005944
PMC: 11861728.
DOI: 10.3390/vetsci12020183.
The Nun Study: Insights from 30 years of aging and dementia research.
Clarke K, Etemadmoghadam S, Danner B, Corbett C, Ghaseminejad-Bandpey A, Dopler M
Alzheimers Dement. 2025; 21(2):e14626.
PMID: 39998266
PMC: 11852352.
DOI: 10.1002/alz.14626.
Spatial transcriptomic analysis of HIV and tuberculosis coinfection in a humanized mouse model reveals specific transcription patterns, immune responses and early morphological alteration signaling.
Adduri S, Bohorquez J, Adejare O, Rincon D, Tucker T, Konduru N
bioRxiv. 2025; .
PMID: 39975088
PMC: 11838271.
DOI: 10.1101/2025.01.29.635571.
Single-cell and spatial transcriptomics reveal a potential role of ATF3 in brain metastasis of lung adenocarcinoma.
Xu C, Bao J, Pan D, Wei K, Gao Q, Lin W
Transl Lung Cancer Res. 2025; 14(1):209-223.
PMID: 39958219
PMC: 11826269.
DOI: 10.21037/tlcr-24-784.
Microglia aggregates define distinct immune and neurodegenerative niches in Alzheimer's disease hippocampus.
Fixemer S, Miranda de la Maza M, Hammer G, Jeannelle F, Schreiner S, Gerardy J
Acta Neuropathol. 2025; 149(1):19.
PMID: 39954093
PMC: 11829914.
DOI: 10.1007/s00401-025-02857-8.
Connecting the structure and function of cartilage using spatial omics.
Prasadam I, Fan X
Nat Rev Rheumatol. 2025; .
PMID: 39953140
DOI: 10.1038/s41584-025-01225-w.
STMiner: Gene-centric spatial transcriptomics for deciphering tumor tissues.
Sun P, Bush S, Wang S, Jia P, Li M, Xu T
Cell Genom. 2025; 5(2):100771.
PMID: 39947134
PMC: 11872602.
DOI: 10.1016/j.xgen.2025.100771.
New dimension in viral hepatitis research.
Cocca M, Testoni B
eGastroenterology. 2025; 2(3):e100136.
PMID: 39944365
PMC: 11731076.
DOI: 10.1136/egastro-2024-100136.
Heterogeneity in Cancer.
MacDonald W, Purcell C, Pinho-Schwermann M, Stubbs N, Srinivasan P, El-Deiry W
Cancers (Basel). 2025; 17(3).
PMID: 39941808
PMC: 11816170.
DOI: 10.3390/cancers17030441.
Kernel-bounded clustering for spatial transcriptomics enables scalable discovery of complex spatial domains.
Zhang H, Zhang Y, Ting K, Zhang J, Zhao Q
Genome Res. 2025; 35(2):355-367.
PMID: 39909714
PMC: 11874963.
DOI: 10.1101/gr.278983.124.
Introducing the Global Alliance for Spatial Technologies (GESTALT).
Plummer J, Vlachos I, Martelotto L
Nat Genet. 2025; 57(2):275-279.
PMID: 39901011
DOI: 10.1038/s41588-024-02066-1.
Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data.
Yan G, Hua S, Li J
Nat Commun. 2025; 16(1):1141.
PMID: 39880807
PMC: 11779979.
DOI: 10.1038/s41467-025-56080-w.
Comparison of imaging-based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed, paraffin-embedded tumor samples.
Lermi N, Soto L, Ayala M, Ruiz S, Lu W, Khan K
Res Sq. 2025; .
PMID: 39877088
PMC: 11774462.
DOI: 10.21203/rs.3.rs-5656204/v1.
Tumour hypoxia in driving genomic instability and tumour evolution.
Suvac A, Ashton J, Bristow R
Nat Rev Cancer. 2025; 25(3):167-188.
PMID: 39875616
DOI: 10.1038/s41568-024-00781-9.
Mapping the topography of spatial gene expression with interpretable deep learning.
Chitra U, Arnold B, Sarkar H, Sanno K, Ma C, Lopez-Darwin S
Nat Methods. 2025; 22(2):298-309.
PMID: 39849132
DOI: 10.1038/s41592-024-02503-3.
