» Articles » PMID: 33402023

Branching Principles of Animal and Plant Networks Identified by Combining Extensive Data, Machine Learning and Modelling

Overview
Date 2021 Jan 6
PMID 33402023
Citations 4
Authors
Affiliations
Soon will be listed here.
Abstract

Branching in vascular networks and in overall organismic form is one of the most common and ancient features of multicellular plants, fungi and animals. By combining machine-learning techniques with new theory that relates vascular form to metabolic function, we enable novel classification of diverse branching networks-mouse lung, human head and torso, angiosperm and gymnosperm plants. We find that ratios of limb radii-which dictate essential biologic functions related to resource transport and supply-are best at distinguishing branching networks. We also show how variation in vascular and branching geometry persists despite observing a convergent relationship across organisms for how metabolic rate depends on body mass.

Citing Articles

Scaling in branch thickness and the fractal aesthetic of trees.

Gao J, Newberry M PNAS Nexus. 2025; 4(2):pgaf003.

PMID: 39935591 PMC: 11812039. DOI: 10.1093/pnasnexus/pgaf003.


Neuronal branching is increasingly asymmetric near synapses, potentially enabling plasticity while minimizing energy dissipation and conduction time.

Desai-Chowdhry P, Brummer A, Mallavarapu S, Savage V J R Soc Interface. 2023; 20(206):20230265.

PMID: 37669695 PMC: 10480011. DOI: 10.1098/rsif.2023.0265.


Mapping the blood vasculature in an intact human kidney using hierarchical phase-contrast tomography.

Rahmani S, Jafree D, Lee P, Tafforeau P, Brunet J, Nandanwar S bioRxiv. 2023; .

PMID: 37034801 PMC: 10081185. DOI: 10.1101/2023.03.28.534566.


Spatial and Texture Analysis of Root System distribution with Earth mover's Distance (STARSEED).

Peeples J, Xu W, Gloaguen R, Rowland D, Zare A, Brym Z Plant Methods. 2023; 19(1):2.

PMID: 36604751 PMC: 9814335. DOI: 10.1186/s13007-022-00974-z.


Variable metabolic scaling breaks the law: from 'Newtonian' to 'Darwinian' approaches.

Glazier D Proc Biol Sci. 2022; 289(1985):20221605.

PMID: 36259209 PMC: 9579773. DOI: 10.1098/rspb.2022.1605.

References
1.
Price C, Weitz J, Savage V, Stegen J, Clarke A, Coomes D . Testing the metabolic theory of ecology. Ecol Lett. 2012; 15(12):1465-74. DOI: 10.1111/j.1461-0248.2012.01860.x. View

2.
Smith D, Sperry J, Enquist B, Savage V, McCulloh K, Bentley L . Deviation from symmetrically self-similar branching in trees predicts altered hydraulics, mechanics, light interception and metabolic scaling. New Phytol. 2013; 201(1):217-229. DOI: 10.1111/nph.12487. View

3.
Prakash R, Li W, Qu Z, Johnson M, Fagan S, Ergul A . Vascularization pattern after ischemic stroke is different in control versus diabetic rats: relevance to stroke recovery. Stroke. 2013; 44(10):2875-82. PMC: 3827629. DOI: 10.1161/STROKEAHA.113.001660. View

4.
Jain R . Normalization of tumor vasculature: an emerging concept in antiangiogenic therapy. Science. 2005; 307(5706):58-62. DOI: 10.1126/science.1104819. View

5.
Wang X, Leader J, Wang R, Wilson D, Herman J, Yuan J . Vasculature surrounding a nodule: A novel lung cancer biomarker. Lung Cancer. 2017; 114:38-43. PMC: 5880279. DOI: 10.1016/j.lungcan.2017.10.008. View