» Articles » PMID: 33374835

Long Non-Coding RNAs, the Dark Matter: An Emerging Regulatory Component in Plants

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2020 Dec 30
PMID 33374835
Citations 19
Authors
Affiliations
Soon will be listed here.
Abstract

Long non-coding RNAs (lncRNAs) are pervasive transcripts of longer than 200 nucleotides and indiscernible coding potential. lncRNAs are implicated as key regulatory molecules in various fundamental biological processes at transcriptional, post-transcriptional, and epigenetic levels. Advances in computational and experimental approaches have identified numerous lncRNAs in plants. lncRNAs have been found to act as prime mediators in plant growth, development, and tolerance to stresses. This review summarizes the current research status of lncRNAs in planta, their classification based on genomic context, their mechanism of action, and specific bioinformatics tools and resources for their identification and characterization. Our overarching goal is to summarize recent progress on understanding the regulatory role of lncRNAs in plant developmental processes such as flowering time, reproductive growth, and abiotic stresses. We also review the role of lncRNA in nutrient stress and the ability to improve biotic stress tolerance in plants. Given the pivotal role of lncRNAs in various biological processes, their functional characterization in agriculturally essential crop plants is crucial for bridging the gap between phenotype and genotype.

Citing Articles

Maize transcriptome profiling reveals low temperatures affect photosynthesis during the emergence stage.

Bozic M, Ignjatovic Micic D, Andelkovic V, Delic N, Nikolic A Front Plant Sci. 2025; 16:1527447.

PMID: 39935955 PMC: 11810925. DOI: 10.3389/fpls.2025.1527447.


A long noncoding RNA functions in pumpkin fruit development through S-adenosyl-L-methionine synthetase.

Tian J, Zhang F, Zhang G, Li X, Wen C, Li H Plant Physiol. 2024; 195(2):940-957.

PMID: 38417836 PMC: 11142375. DOI: 10.1093/plphys/kiae099.


The Emerging Role of Non-Coding RNAs (ncRNAs) in Plant Growth, Development, and Stress Response Signaling.

Yadav A, Mathan J, Dubey A, Singh A Noncoding RNA. 2024; 10(1).

PMID: 38392968 PMC: 10893181. DOI: 10.3390/ncrna10010013.


Long Non-Coding RNAs: Discoveries, Mechanisms, and Research Strategies in Seeds.

Li X, Liu Q, Liu J Genes (Basel). 2023; 14(12).

PMID: 38137035 PMC: 10742540. DOI: 10.3390/genes14122214.


Editorial: Salinity and drought stress in plants: understanding physiological, biochemical and molecular responses.

Waseem M, Liu P, Aslam M Front Plant Sci. 2023; 14:1277859.

PMID: 37900764 PMC: 10600363. DOI: 10.3389/fpls.2023.1277859.


References
1.
Jin J, Liu J, Wang H, Wong L, Chua N . PLncDB: plant long non-coding RNA database. Bioinformatics. 2013; 29(8):1068-71. PMC: 3624813. DOI: 10.1093/bioinformatics/btt107. View

2.
Fang J, Zhang F, Wang H, Wang W, Zhao F, Li Z . locus shortens rice maturity duration without yield penalty. Proc Natl Acad Sci U S A. 2019; 116(37):18717-18722. PMC: 6744900. DOI: 10.1073/pnas.1815030116. View

3.
Lubas M, Andersen P, Schein A, Dziembowski A, Kudla G, Jensen T . The human nuclear exosome targeting complex is loaded onto newly synthesized RNA to direct early ribonucleolysis. Cell Rep. 2015; 10(2):178-92. DOI: 10.1016/j.celrep.2014.12.026. View

4.
Gai Y, Yuan S, Zhao Y, Zhao H, Zhang H, Ji X . A Novel LncRNA, , Associated With Environmental Stress in Mulberry (). Front Plant Sci. 2018; 9:669. PMC: 5987159. DOI: 10.3389/fpls.2018.00669. View

5.
Kindgren P, Ard R, Ivanov M, Marquardt S . Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation. Nat Commun. 2018; 9(1):4561. PMC: 6212407. DOI: 10.1038/s41467-018-07010-6. View