Boudreau B, Hustmyer C, Kotlajich M, Landick R
Methods Mol Biol. 2024; 2819:381-419.
PMID: 39028516
DOI: 10.1007/978-1-0716-3930-6_18.
Han X, Turnbough Jr C
J Bacteriol. 2014; 196(16):2912-20.
PMID: 24891446
PMC: 4135645.
DOI: 10.1128/JB.01753-14.
Hofmann N, Wurm R, Wagner R
PLoS One. 2011; 6(5):e19235.
PMID: 21573101
PMC: 3089606.
DOI: 10.1371/journal.pone.0019235.
Hsu L
Methods. 2008; 47(1):25-36.
PMID: 18948204
PMC: 2647590.
DOI: 10.1016/j.ymeth.2008.10.010.
MacLellan S, Eiamphungporn W, Helmann J
Methods. 2008; 47(1):73-7.
PMID: 18948201
PMC: 2632846.
DOI: 10.1016/j.ymeth.2008.10.009.
Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.
Davis C, Bingman C, Landick R, Record Jr M, Saecker R
Proc Natl Acad Sci U S A. 2007; 104(19):7833-8.
PMID: 17470797
PMC: 1876533.
DOI: 10.1073/pnas.0609888104.
Studies on the function of the riboregulator 6S RNA from E. coli: RNA polymerase binding, inhibition of in vitro transcription and synthesis of RNA-directed de novo transcripts.
Gildehaus N, Neusser T, Wurm R, Wagner R
Nucleic Acids Res. 2007; 35(6):1885-96.
PMID: 17332013
PMC: 1874619.
DOI: 10.1093/nar/gkm085.
The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.
Davis C, Capp M, Record Jr M, Saecker R
Proc Natl Acad Sci U S A. 2005; 102(2):285-90.
PMID: 15626761
PMC: 544287.
DOI: 10.1073/pnas.0405779102.
Identification of sigmaB-dependent genes in Bacillus cereus by proteome and in vitro transcription analysis.
van Schaik W, Zwietering M, de Vos W, Abee T
J Bacteriol. 2004; 186(13):4100-9.
PMID: 15205411
PMC: 421595.
DOI: 10.1128/JB.186.13.4100-4109.2004.
Interaction of RNA polymerase with forked DNA: evidence for two kinetically significant intermediates on the pathway to the final complex.
Tsujikawa L, Tsodikov O, deHaseth P
Proc Natl Acad Sci U S A. 2002; 99(6):3493-8.
PMID: 11891334
PMC: 122551.
DOI: 10.1073/pnas.062487299.
A long T. A tract in the upp initially transcribed region is required for regulation of upp expression by UTP-dependent reiterative transcription in Escherichia coli.
Cheng Y, Dylla S, Turnbough Jr C
J Bacteriol. 2000; 183(1):221-8.
PMID: 11114920
PMC: 94869.
DOI: 10.1128/JB.183.1.221-228.2001.
Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases.
Mote Jr J, Reines D
J Biol Chem. 1998; 273(27):16843-52.
PMID: 9642244
PMC: 3371603.
DOI: 10.1074/jbc.273.27.16843.
Regulation of carAB expression in Escherichia coli occurs in part through UTP-sensitive reiterative transcription.
Han X, Turnbough Jr C
J Bacteriol. 1998; 180(3):705-13.
PMID: 9457878
PMC: 106942.
DOI: 10.1128/JB.180.3.705-713.1998.
Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates.
Uptain S, CHAMBERLIN M
Proc Natl Acad Sci U S A. 1998; 94(25):13548-53.
PMID: 9391063
PMC: 28343.
DOI: 10.1073/pnas.94.25.13548.
Regulation of upp expression in Escherichia coli by UTP-sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription.
Tu A, Turnbough Jr C
J Bacteriol. 1997; 179(21):6665-73.
PMID: 9352914
PMC: 179593.
DOI: 10.1128/jb.179.21.6665-6673.1997.
Physical interference between escherichia coli RNA polymerase molecules transcribing in tandem enhances abortive synthesis and misincorporation.
Kubori T, Shimamoto N
Nucleic Acids Res. 1997; 25(13):2640-7.
PMID: 9185576
PMC: 146789.
DOI: 10.1093/nar/25.13.2640.
Upstream interactions at the lambda pRM promoter are sequence nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter.
Tang Y, Murakami K, Ishihama A, deHaseth P
J Bacteriol. 1996; 178(23):6945-51.
PMID: 8955318
PMC: 178597.
DOI: 10.1128/jb.178.23.6945-6951.1996.
Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA.
Liu K, Zhang Y, Severinov K, Das A, Hanna M
EMBO J. 1996; 15(1):150-61.
PMID: 8598198
PMC: 449927.
Escherichia coli fliAZY operon.
Mytelka D, CHAMBERLIN M
J Bacteriol. 1996; 178(1):24-34.
PMID: 8550423
PMC: 177617.
DOI: 10.1128/jb.178.1.24-34.1996.
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro.
Hsu L, Vo N, CHAMBERLIN M
Proc Natl Acad Sci U S A. 1995; 92(25):11588-92.
PMID: 8524809
PMC: 40447.
DOI: 10.1073/pnas.92.25.11588.
