» Articles » PMID: 32958773

Macroecological Laws Describe Variation and Diversity in Microbial Communities

Overview
Journal Nat Commun
Specialty Biology
Date 2020 Sep 22
PMID 32958773
Citations 51
Authors
Affiliations
Soon will be listed here.
Abstract

How the coexistence of many species is maintained is a fundamental and unresolved question in ecology. Coexistence is a puzzle because we lack a mechanistic understanding of the variation in species presence and abundance. Whether variation in ecological communities is driven by deterministic or random processes is one of the most controversial issues in ecology. Here, I study the variation of species presence and abundance in microbial communities from a macroecological standpoint. I identify three macroecological laws that quantitatively characterize the fluctuation of species abundance across communities and over time. Using these three laws, one can predict species' presence and absence, diversity, and commonly studied macroecological patterns. I show that a mathematical model based on environmental stochasticity, the stochastic logistic model, quantitatively predicts the three macroecological laws, as well as non-stationary properties of community dynamics.

Citing Articles

Resolving ecological drivers of temporal variations of β-diversity across intertidal microbiomes.

Liu X, Gong X, Ma K, Song W, Zhou J, Wang M ISME Commun. 2025; 5(1):ycaf025.

PMID: 40041707 PMC: 11879246. DOI: 10.1093/ismeco/ycaf025.


Growth-rate distributions of gut microbiota time series.

Brigatti E, Azaele S Sci Rep. 2025; 15(1):2789.

PMID: 39843722 PMC: 11754794. DOI: 10.1038/s41598-024-82882-x.


Inferring stability and persistence in the vaginal microbiome: A stochastic model of ecological dynamics.

Ponciano J, Forney L, Gomez J, Ravel J Res Sq. 2024; .

PMID: 39678336 PMC: 11643332. DOI: 10.21203/rs.3.rs-5411591/v1.


Designing host-associated microbiomes using the consumer/resource model.

Plata G, Srinivasan K, Krishnamurthy M, Herron L, Dixit P mSystems. 2024; 10(1):e0106824.

PMID: 39651880 PMC: 11748559. DOI: 10.1128/msystems.01068-24.


Distinct dynamic phases observed in bacterial microcosms.

Aparicio A, Liu Y Eng Microbiol. 2024; 3(1):100063.

PMID: 39628518 PMC: 11611004. DOI: 10.1016/j.engmic.2022.100063.


References
1.
Ley R, Lozupone C, Hamady M, Knight R, Gordon J . Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol. 2008; 6(10):776-88. PMC: 2664199. DOI: 10.1038/nrmicro1978. View

2.
Thompson L, Sanders J, McDonald D, Amir A, Ladau J, Locey K . A communal catalogue reveals Earth's multiscale microbial diversity. Nature. 2017; 551(7681):457-463. PMC: 6192678. DOI: 10.1038/nature24621. View

3.
Engen S, Lande R . Population dynamic models generating the lognormal species abundance distribution. Math Biosci. 1996; 132(2):169-83. DOI: 10.1016/0025-5564(95)00054-2. View

4.
Ser-Giacomi E, Zinger L, Malviya S, de Vargas C, Karsenti E, Bowler C . Ubiquitous abundance distribution of non-dominant plankton across the global ocean. Nat Ecol Evol. 2018; 2(8):1243-1249. DOI: 10.1038/s41559-018-0587-2. View

5.
Locey K, Lennon J . Scaling laws predict global microbial diversity. Proc Natl Acad Sci U S A. 2016; 113(21):5970-5. PMC: 4889364. DOI: 10.1073/pnas.1521291113. View