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Genes, Proteins and Other Networks Regulating Somatic Embryogenesis in Plants

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Specialty Biotechnology
Date 2020 Jul 15
PMID 32661633
Citations 25
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Abstract

Background: Somatic embryogenesis (SE) is an intricate molecular and biochemical process principally based on cellular totipotency and a model in studying plant development. In this unique embryo-forming process, the vegetative cells acquire embryogenic competence under cellular stress conditions. The stress caused by plant growth regulators (PGRs), nutrient, oxygenic, or other signaling elements makes cellular reprogramming and transforms vegetative cells into embryos through activation/deactivation of a myriad of genes and transcriptional networks. Hundreds of genes have been directly linked to zygotic and somatic embryogeneses; some of them like SOMATIC EMBRYOGENESIS LIKE RECEPTOR KINASE (SERK), LEAFY COTYLEDON (LEC), BABYBOOM (BBM), and AGAMOUS-LIKE 15 (AGL15) are very important and are part of molecular network.

Main Text (observation): This article reviews various genes/orthologs isolated from different plants; encoded proteins and their possible role in regulating somatic embryogenesis of plants have been discussed. The role of SERK in regulating embryogenesis is also summarized. Different SE-related proteins identified through LC-MS at various stages of embryogenesis are also described; a few proteins like 14-3-3, chitinase, and LEA are used as potential SE markers. These networks are interconnected in a complicated manner, posing challenges for their complete elucidation.

Conclusions: The various gene networks and factors controlling somatic embryogenesis have been discussed and presented. The roles of stress, PGRs, and other signaling elements have been discussed. In the last two-to-three decades' progress, the challenges ahead and its future applications in various fields of research have been highlighted. The review also presents the need of high throughput, innovative techniques, and sensitive instruments in unraveling the mystery of SE.

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References
1.
Higashi K, Shiota H, Kamada H . Patterns of expression of the genes for glutamine synthetase isoforms during somatic and zygotic embryogenesis in carrot. Plant Cell Physiol. 1998; 39(4):418-24. DOI: 10.1093/oxfordjournals.pcp.a029385. View

2.
Yang H, Saitou T, Komeda Y, Harada H, Kamada H . Arabidopsis thaliana ECP63 encoding a LEA protein is located in chromosome 4. Gene. 1997; 184(1):83-8. View

3.
Pasternak T, Prinsen E, Ayaydin F, Miskolczi P, Potters G, Asard H . The Role of auxin, pH, and stress in the activation of embryogenic cell division in leaf protoplast-derived cells of alfalfa. Plant Physiol. 2002; 129(4):1807-19. PMC: 166769. DOI: 10.1104/pp.000810. View

4.
Mantelin S, Peng H, Li B, Atamian H, Takken F, Kaloshian I . The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato. Plant J. 2011; 67(3):459-71. DOI: 10.1111/j.1365-313X.2011.04609.x. View

5.
Duarte-Ake F, Castillo-Castro E, Pool F, Espadas F, Santamaria J, Robert M . Physiological differences and changes in global DNA methylation levels in Agave angustifolia Haw. albino variant somaclones during the micropropagation process. Plant Cell Rep. 2016; 35(12):2489-2502. DOI: 10.1007/s00299-016-2049-0. View