A Bioorthogonal Chemical Reporter of Viral Infection
Overview
Affiliations
Pathogen-selective labeling was achieved by using the novel gemcitabine metabolite analogue 2'-deoxy-2',2'-difluoro-5-ethynyluridine (dF-EdU) and click chemistry. Cells infected with Herpes Simplex Virus-1 (HSV-1), but not uninfected cells, exhibit nuclear staining upon the addition of dF-EdU and a fluorescent azide. The incorporation of the dF-EdU into DNA depends on its phosphorylation by a herpes virus thymidine kinase (TK). Crystallographic analyses revealed how dF-EdU is well accommodated in the active site of HSV-1 TK, but steric clashes prevent dF-EdU from binding human TK. These results provide the first example of pathogen-enzyme-dependent incorporation and labeling of bioorthogonal functional groups in human cells.
An Optimized Enzyme-Nucleobase Pair Enables RNA Metabolic Labeling with Improved Cell-Specificity.
Singha M, Zimak J, Levine S, Dai N, Hong C, Anaraki C Biochemistry. 2022; 61(23):2638-2642.
PMID: 36383486 PMC: 10149115. DOI: 10.1021/acs.biochem.2c00559.
A Bump-Hole Strategy for Increased Stringency of Cell-Specific Metabolic Labeling of RNA.
Nguyen K, Kubota M, Del Arco J, Feng C, Singha M, Beasley S ACS Chem Biol. 2020; 15(12):3099-3105.
PMID: 33222436 PMC: 7814973. DOI: 10.1021/acschembio.0c00755.
Metabolic Incorporation of Azide Functionality into Cellular RNA.
Nainar S, Beasley S, Fazio M, Kubota M, Dai N, Correa Jr I Chembiochem. 2016; 17(22):2149-2152.
PMID: 27595557 PMC: 5115926. DOI: 10.1002/cbic.201600300.