» Articles » PMID: 32193685

Delineation of Phenotypes and Genotypes Related to Cohesin Structural Protein RAD21

Abstract

RAD21 encodes a key component of the cohesin complex, and variants in RAD21 have been associated with Cornelia de Lange Syndrome (CdLS). Limited information on phenotypes attributable to RAD21 variants and genotype-phenotype relationships is currently published. We gathered a series of 49 individuals from 33 families with RAD21 alterations [24 different intragenic sequence variants (2 recurrent), 7 unique microdeletions], including 24 hitherto unpublished cases. We evaluated consequences of 12 intragenic variants by protein modelling and molecular dynamic studies. Full clinical information was available for 29 individuals. Their phenotype is an attenuated CdLS phenotype compared to that caused by variants in NIPBL or SMC1A for facial morphology, limb anomalies, and especially for cognition and behavior. In the 20 individuals with limited clinical information, additional phenotypes include Mungan syndrome (in patients with biallelic variants) and holoprosencephaly, with or without CdLS characteristics. We describe several additional cases with phenotypes including sclerocornea, in which involvement of the RAD21 variant is uncertain. Variants were frequently familial, and genotype-phenotype analyses demonstrated striking interfamilial and intrafamilial variability. Careful phenotyping is essential in interpreting consequences of RAD21 variants, and protein modeling and dynamics can be helpful in determining pathogenicity. The current study should be helpful when counseling families with a RAD21 variation.

Citing Articles

An intragenic duplication in the AFF2 gene associated with Cornelia de Lange syndrome phenotype.

Lucia-Campos C, Parenti I, Latorre-Pellicer A, Gil-Salvador M, Bestetti I, Finelli P Front Genet. 2024; 15:1472543.

PMID: 39553472 PMC: 11563810. DOI: 10.3389/fgene.2024.1472543.


Clinical Characteristics, Genetic Analysis, and Literature Review of Cornelia de Lange Syndrome Type 4 Associated With a RAD21 Variant.

Yue X, Chen M, Ke X, Yang H, Gong F, Wang L Mol Genet Genomic Med. 2024; 12(9):e70009.

PMID: 39286962 PMC: 11406311. DOI: 10.1002/mgg3.70009.


Cohesin composition and dosage independently affect early development in zebrafish.

Labudina A, Meier M, Gimenez G, Tatarakis D, Ketharnathan S, Mackie B Development. 2024; 151(15).

PMID: 38975838 PMC: 11317101. DOI: 10.1242/dev.202593.


STAG2: Computational Analysis of Missense Variants Involved in Disease.

Ros-Pardo D, Gomez-Puertas P, Marcos-Alcalde I Int J Mol Sci. 2024; 25(2).

PMID: 38279279 PMC: 10816197. DOI: 10.3390/ijms25021280.


Cornelia de Lange Syndrome Caused by an Intragenic Heterozygous Deletion in Detected through Very-High-Resolution Chromosomal Microarray Analysis.

Abarca-Barriga H, Punil Luciano R, Vasquez Sotomayor F Genes (Basel). 2023; 14(12).

PMID: 38137034 PMC: 10742884. DOI: 10.3390/genes14122212.


References
1.
Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon W . Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome. J Proteomics Bioinform. 2011; 4(2):22-35. PMC: 3124146. DOI: 10.4172/jpb.1000163. View

2.
Hornbeck P, Zhang B, Murray B, Kornhauser J, Latham V, Skrzypek E . PhosphoSitePlus, 2014: mutations, PTMs and recalibrations. Nucleic Acids Res. 2014; 43(Database issue):D512-20. PMC: 4383998. DOI: 10.1093/nar/gku1267. View

3.
Yuan B, Neira J, Pehlivan D, Santiago-Sim T, Song X, Rosenfeld J . Clinical exome sequencing reveals locus heterogeneity and phenotypic variability of cohesinopathies. Genet Med. 2018; 21(3):663-675. PMC: 6395558. DOI: 10.1038/s41436-018-0085-6. View

4.
Newkirk D, Chen Y, Chien R, Zeng W, Biesinger J, Flowers E . The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome. Clin Epigenetics. 2017; 9:89. PMC: 5574093. DOI: 10.1186/s13148-017-0391-x. View

5.
Yuen R, Thiruvahindrapuram B, Merico D, Walker S, Tammimies K, Hoang N . Whole-genome sequencing of quartet families with autism spectrum disorder. Nat Med. 2015; 21(2):185-91. DOI: 10.1038/nm.3792. View