» Articles » PMID: 32029823

Impact of Bayesian Inference on the Selection of Psidium Guajava

Overview
Journal Sci Rep
Specialty Science
Date 2020 Feb 8
PMID 32029823
Citations 4
Authors
Affiliations
Soon will be listed here.
Abstract

Perennial breeding species demand substantial investment in various resources, mainly the required time to obtain adult and productive plants. Estimating several genetic parameters in these species, in a more confidence way, means saving resources when selecting a new genotype. A model using the Bayesian approach was compared with the frequentist methodology for selecting superior genotypes. A population of 17 families of full-siblings of guava tree was evaluated, and the yield, fruit mass, and pulp mass were measured. The Bayesian methodology suggest more accurate estimates of variance components, as well as better results to fit of model in a cross-validation. Proper priori for Bayesian model is very important to convergency of chains, mainly for small datasets. Even with poor priori, Bayesian was better than frequentist approach.

Citing Articles

Multi-Environment and Multi-Year Bayesian Analysis Approach in .

Covre A, da Silva F, Oliosi G, Correa C, Viana A, Partelli F Plants (Basel). 2022; 11(23).

PMID: 36501314 PMC: 9741437. DOI: 10.3390/plants11233274.


Bayesian ridge regression shows the best fit for SSR markers in Psidium guajava among Bayesian models.

da Silva F, Viana A, Correa C, Santos E, de Oliveira J, Andrade J Sci Rep. 2021; 11(1):13639.

PMID: 34211058 PMC: 8249379. DOI: 10.1038/s41598-021-93120-z.


Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy.

Peixoto M, Evangelista J, Coelho I, Alves R, Laviola B, Silva F PLoS One. 2021; 16(3):e0247775.

PMID: 33661980 PMC: 7932130. DOI: 10.1371/journal.pone.0247775.


Genetic Progress of Seed Yield and Nitrogen Use Efficiency of Brazilian Common Bean Cultivars Using Bayesian Approaches.

Zeffa D, Moda-Cirino V, Medeiros I, Freiria G, Dos Santos Neto J, Ivamoto-Suzuki S Front Plant Sci. 2020; 11:1168.

PMID: 32849723 PMC: 7419646. DOI: 10.3389/fpls.2020.01168.

References
1.
Henderson C . Best linear unbiased estimation and prediction under a selection model. Biometrics. 1975; 31(2):423-47. View

2.
Mostofian B, Zuckerman D . Statistical Uncertainty Analysis for Small-Sample, High Log-Variance Data: Cautions for Bootstrapping and Bayesian Bootstrapping. J Chem Theory Comput. 2019; 15(6):3499-3509. PMC: 6754704. DOI: 10.1021/acs.jctc.9b00015. View

3.
Junqueira V, de Azevedo Peixoto L, Laviola B, Bhering L, Mendonca S, Agostini Costa T . Bayesian Multi-Trait Analysis Reveals a Useful Tool to Increase Oil Concentration and to Decrease Toxicity in Jatropha curcas L. PLoS One. 2016; 11(6):e0157038. PMC: 4900661. DOI: 10.1371/journal.pone.0157038. View

4.
van Eeuwijk F, Bustos-Korts D, Millet E, Boer M, Kruijer W, Thompson A . Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding. Plant Sci. 2019; 282:23-39. DOI: 10.1016/j.plantsci.2018.06.018. View

5.
Sorensen D . Developments in statistical analysis in quantitative genetics. Genetica. 2008; 136(2):319-32. DOI: 10.1007/s10709-008-9303-5. View