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Predatory Organisms with Untapped Biosynthetic Potential: Descriptions of Novel Species Sp. Nov., Sp. Nov., Sp. Nov., Sp. Nov., Sp. Nov., Sp. Nov., Sp. Nov., and Sp. Nov

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Date 2019 Nov 3
PMID 31676482
Citations 26
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Abstract

spp. are common soil-dwelling organisms which kill and consume prey microbes through the secretion of antimicrobial substances. Two species of have been described previously ( and ). A polyphasic approach, including biochemical analysis of fatty acid methyl esters, substrate utilization, and sugar assimilation assays, was taken to characterize eight species strains and the two type strains. The genomes of all strains, including that of DSM 14696 (newly reported here), shared an average nucleotide identity below 95% and digital DNA-DNA hybridization scores of less than 70%, indicating that they belong to distinct species. In addition, we characterized the prey range and antibiotic resistance profile of each strain, illustrating the diversity of antimicrobial activity and, thus, the potential for drug discovery within the genus. Each strain gave a distinct profile of properties, which together with their genomic differences supports the proposal of the eight candidate strains as novel species. The eight candidates are as follows: sp. nov. (AB043A DSM 108849 = NBRC 113887), sp. nov. (AB047A DSM 108843 = NBRC 113888), sp. nov. (AB050A = DSM 108846 = NBRC 114019), sp. nov. (CA031B DSM 108841 = NBRC 113889), sp. nov. (CA040B DSM 108850 = NBRC 113890), sp. nov. (CA043D DSM 108842 = NBRC 113891), sp. nov. (CA051B DSM 108844 = NBRC 114100), and sp. nov. (CA054A DSM 108848 = NBRC 113892). is a genus of predators with broad prey ranges, whose genomes contain large numbers of gene clusters for secondary metabolite biosynthesis. The physiology and evolutionary heritage of eight species strains were characterized using a range of analyses and assays. Multiple metrics confirmed that each strain belonged to a novel species within the genus. The strains exhibited distinct patterns of drug resistance and predatory activity, which mirrored their possession of diverse sets of biosynthetic genes. The breadth of antimicrobial activities observed within the genus highlights their potential for drug discovery and suggests a previous underestimation of both their taxonomic diversity and biotechnological potential. Taxonomic assignment of environmental isolates to novel species allows us to begin to characterize the diversity and evolution of members of this bacterial genus with potential biotechnological importance, guiding future bioprospecting efforts for novel biologically active metabolites and antimicrobials.

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References
1.
Kumar S, Stecher G, Li M, Knyaz C, Tamura K . MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol. 2018; 35(6):1547-1549. PMC: 5967553. DOI: 10.1093/molbev/msy096. View

2.
Gregory K, Salvador L, Akbar S, Adaikpoh B, Stevens D . Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential. Microorganisms. 2019; 7(6). PMC: 6616573. DOI: 10.3390/microorganisms7060181. View

3.
Livingstone P, Morphew R, Whitworth D . Myxobacteria Are Able to Prey Broadly upon Clinically-Relevant Pathogens, Exhibiting a Prey Range Which Cannot Be Explained by Phylogeny. Front Microbiol. 2017; 8:1593. PMC: 5572228. DOI: 10.3389/fmicb.2017.01593. View

4.
Marshall R, Whitworth D . Is "Wolf-Pack" Predation by Antimicrobial Bacteria Cooperative? Cell Behaviour and Predatory Mechanisms Indicate Profound Selfishness, Even when Working Alongside Kin. Bioessays. 2019; 41(4):e1800247. DOI: 10.1002/bies.201800247. View

5.
Dawid W . Biology and global distribution of myxobacteria in soils. FEMS Microbiol Rev. 2000; 24(4):403-27. DOI: 10.1111/j.1574-6976.2000.tb00548.x. View