» Articles » PMID: 31504764

Functional Analysis of Cwc24 ZF-domain in 5' Splice Site Selection

Overview
Specialty Biochemistry
Date 2019 Sep 11
PMID 31504764
Citations 1
Authors
Affiliations
Soon will be listed here.
Abstract

The essential splicing factor Cwc24 contains a zinc-finger (ZF) domain required for its function in splicing. Cwc24 binds over the 5' splice site after the spliceosome is activated, and its binding prior to Prp2-mediated spliceosome remodeling is important for proper interactions of U5 and U6 with the 5' splice site sequence and selection of the 5' splice site. Here, we show that Cwc24 transiently interacts with the 5' splice site in formation of the functional RNA catalytic core during spliceosome remodeling, and the ZF-motif is required for specific interaction of Cwc24 with the 5' splice site. Deletion of the ZF domain or mutation of the conserved ZF residues greatly weakened the association of Cwc24 with the spliceosome, and lowered the affinity and specificity of its interaction with the 5' splice site, resulting in atypical interactions of U5, U6 and Prp8 with the 5' splice site, and aberrant cleavage at the 5' splice site. Our results reveal a crucial role of the Cwc24 ZF-motif for defining 5' splice site selection in the first splicing step.

Citing Articles

Structures of aberrant spliceosome intermediates on their way to disassembly.

Soni K, Horvath A, Dybkov O, Schwan M, Trakansuebkul S, Flemming D Nat Struct Mol Biol. 2025; .

PMID: 39833470 DOI: 10.1038/s41594-024-01480-7.


Arresting Spliceosome Intermediates at Various Stages of the Splicing Pathway.

Tseng C, Cheng S Methods Mol Biol. 2023; 2666:193-211.

PMID: 37166667 DOI: 10.1007/978-1-0716-3191-1_15.

References
1.
Cheng S . Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron. Nucleic Acids Res. 1994; 22(9):1548-54. PMC: 308028. DOI: 10.1093/nar/22.9.1548. View

2.
Cordin O, Beggs J . RNA helicases in splicing. RNA Biol. 2012; 10(1):83-95. PMC: 3590240. DOI: 10.4161/rna.22547. View

3.
Klug A . The discovery of zinc fingers and their applications in gene regulation and genome manipulation. Annu Rev Biochem. 2010; 79:213-31. DOI: 10.1146/annurev-biochem-010909-095056. View

4.
Teigelkamp S, Newman A, Beggs J . Extensive interactions of PRP8 protein with the 5' and 3' splice sites during splicing suggest a role in stabilization of exon alignment by U5 snRNA. EMBO J. 1995; 14(11):2602-12. PMC: 398374. DOI: 10.1002/j.1460-2075.1995.tb07258.x. View

5.
Yan C, Wan R, Bai R, Huang G, Shi Y . Structure of a yeast activated spliceosome at 3.5 Å resolution. Science. 2016; 353(6302):904-11. DOI: 10.1126/science.aag0291. View