Genomic and Phenotypic Evaluation of Rice Susceptible Check TN1 Collected in Taiwan

Overview

Journal Bot Stud

Specialty Biology

Date 2019 Aug 31

PMID 31468345

Citations 4

Authors

Yi Li

Yung-Fen Huang

Shou-Horng Huang

Yun-Hung Kuang

Chih-Wei Tung

Chung-Ta Liao

Wen-Po Chuang

Affiliations

Soon will be listed here.

Abstract

Background: Taichung Native 1 (TN1), a variety of rice (Oryza sativa L.) developed in Taiwan, has played a key role in the green revolution of this major staple crop because of its semi-dwarf characteristics. Due to its susceptibility, it has been used as a susceptibility indicator in rice insect and pathogen resistance studies worldwide. While within-variety differences have been reported for agronomic traits in other rice varieties, no study has addressed the within-variety consistency of pathogen and insect susceptibility of TN1, which would influence the result interpretation of plant-pest interaction studies. Therefore, the objective of this study was to evaluate the genomic consistency and to assess a range of agronomic and insect susceptibility traits in three representative accessions of TN1 in Taiwan.

Results: Among these three accessions, two were identical across 43,325 genome-wide single nucleotide polymorphisms (SNPs) while the third one differed at four SNPs. Of the three accessions of TN1, there were minor differences in seed length, seed breadth, length/width ratio, number of leaves and tillers, and number of unfilled seeds. Besides, there was no effect on relative growth rate of Cnaphalocrocis medinalis larvae fed on the three accession sources. Furthermore, there is no different on plant susceptibility among these three accessions against C. medinalis and Nilaparvata lugens.

Conclusion: Our study indicates that it is appropriate to use TN1 in Taiwan to test for rice insect susceptibility as it yields consistent results.

Citing Articles

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Genome wide association studies and candidate gene mining for understanding the genetic basis of straw silica content in a set of (Sharma et Shastry) accessions.

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