» Articles » PMID: 31211389

NF-YC12 is a Key Multi-functional Regulator of Accumulation of Seed Storage Substances in Rice

Overview
Journal J Exp Bot
Specialty Biology
Date 2019 Jun 19
PMID 31211389
Citations 34
Authors
Affiliations
Soon will be listed here.
Abstract

Starch and storage proteins, the primary storage substances of cereal endosperm, are a major source of food for humans. However, the transcriptional regulatory networks of the synthesis and accumulation of storage substances remain largely unknown. Here, we identified a rice endosperm-specific gene, NF-YC12, that encodes a putative nuclear factor-Y transcription factor subunit C. NF-YC12 is expressed in the aleurone layer and starchy endosperm during grain development. Knockout of NF-YC12 significantly decreased grain weight as well as altering starch and protein accumulation and starch granule formation. RNA-sequencing analysis revealed that in the nf-yc12 mutant genes related to starch biosynthesis and the metabolism of energy reserves were enriched in the down-regulated category. In addition, starch and protein contents in seeds differed between NF-YC12-overexpression lines and the wild-type. NF-YC12 was found to interact with NF-YB1. ChIP-qPCR and yeast one-hybrid assays showed that NF-YC12 regulated the rice sucrose transporter OsSUT1 in coordination with NF-YB1 in the aleurone layer. In addition, NF-YC12 was directly bound to the promoters of FLO6 (FLOURY ENDOSPERM6) and OsGS1;3 (glutamine synthetase1) in developing endosperm. This study demonstrates a transcriptional regulatory network involving NF-YC12, which coordinates multiple pathways to regulate endosperm development and the accumulation of storage substances in rice seeds.

Citing Articles

Mining of Root-Specific Expression Genes and Their Core Cis-Regulatory Elements in Plants.

Gao S, Chai Y, Zhou X, Chen S Int J Mol Sci. 2025; 26(4).

PMID: 40004183 PMC: 11855845. DOI: 10.3390/ijms26041720.


Gene Pyramiding Strategies for Sink Size and Source Capacity for High-Yield Japonica Rice Breeding.

Ueda T, Taniguchi Y, Adachi S, Shenton M, Hori K, Tanaka J Rice (N Y). 2025; 18(1):6.

PMID: 39945924 PMC: 11825427. DOI: 10.1186/s12284-025-00756-w.


Genome-Wide Identification and Expression Pattern Analysis of Nuclear Factor Y B/C Genes in , and Functional Identification of .

Xu X, He X, Zhang Q, Yang L Plants (Basel). 2025; 14(3).

PMID: 39943000 PMC: 11819940. DOI: 10.3390/plants14030438.


, a maize NF-Y transcription factor, positively regulates drought and salt stress response in .

Wang Y, Jiao P, Wu C, Wang C, Shi K, Gao X GM Crops Food. 2024; 16(1):28-45.

PMID: 39718137 PMC: 11702966. DOI: 10.1080/21645698.2024.2438421.


Genetic improvement of eating and cooking quality of rice cultivars in southern China.

Cai Y, Chen Z, Liu J, Yu L, Wang Z, Zhu S Plant Biotechnol J. 2024; 23(2):518-531.

PMID: 39546400 PMC: 11772335. DOI: 10.1111/pbi.14517.


References
1.
Mantovani R . The molecular biology of the CCAAT-binding factor NF-Y. Gene. 1999; 239(1):15-27. DOI: 10.1016/s0378-1119(99)00368-6. View

2.
Wu C, Washida H, Onodera Y, Harada K, Takaiwa F . Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression. Plant J. 2000; 23(3):415-21. DOI: 10.1046/j.1365-313x.2000.00797.x. View

3.
Becraft P . Cell fate specification in the cereal endosperm. Semin Cell Dev Biol. 2001; 12(5):387-94. DOI: 10.1006/scdb.2001.0268. View

4.
Nishi A, Nakamura Y, Tanaka N, Satoh H . Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm. Plant Physiol. 2001; 127(2):459-72. PMC: 125082. View

5.
Ishimaru K, Hirose T, Aoki N, Takahashi S, Ono K, Yamamoto S . Antisense expression of a rice sucrose transporter OsSUT1 in rice (Oryza sativa L.). Plant Cell Physiol. 2001; 42(10):1181-5. DOI: 10.1093/pcp/pce148. View