» Articles » PMID: 31172947

HDX-MS Reveals Structural Determinants for RORγ Hyperactivation by Synthetic Agonists

Overview
Journal Elife
Specialty Biology
Date 2019 Jun 8
PMID 31172947
Citations 10
Authors
Affiliations
Soon will be listed here.
Abstract

Members of the nuclear receptor (NR) superfamily regulate both physiological and pathophysiological processes ranging from development and metabolism to inflammation and cancer. Synthetic small molecules targeting NRs are often deployed as therapeutics to correct aberrant NR signaling or as chemical probes to explore the role of the receptor in physiology. Nearly half of NRs do not have specific cognate ligands (termed orphan NRs) and it's unclear if they possess ligand dependent activities. Here we demonstrate that ligand-dependent action of the orphan RORγ can be defined by selectively disrupting putative endogenous-but not synthetic-ligand binding. Furthermore, the characterization of a library of RORγ modulators reveals that structural dynamics of the receptor assessed by HDX-MS correlate with activity in biochemical and cell-based assays. These findings, corroborated with X-ray co-crystallography and site-directed mutagenesis, collectively reveal the structural determinants of RORγ activation, which is critical for designing RORγ agonists for cancer immunotherapy.

Citing Articles

A High-Quality Photoswitchable Probe that Selectively and Potently Regulates the Transcription Factor RORγ.

Reynders M, Willems S, Marschner J, Wein T, Merk D, Thorn-Seshold O Angew Chem Int Ed Engl. 2024; 63(49):e202410139.

PMID: 39248642 PMC: 11586699. DOI: 10.1002/anie.202410139.


Next-generation retinoid X receptor agonists increase ATRA signaling in organotypic epithelium cultures and have distinct effects on receptor dynamics.

Melo N, Belyaeva O, Berger W, Halasz L, Yu J, Pilli N J Biol Chem. 2022; 299(1):102746.

PMID: 36436565 PMC: 9807999. DOI: 10.1016/j.jbc.2022.102746.


Fundamentals of HDX-MS.

Vinciauskaite V, Masson G Essays Biochem. 2022; 67(2):301-314.

PMID: 36251047 PMC: 10070489. DOI: 10.1042/EBC20220111.


Statistical Analysis of Protein-Ligand Interaction Patterns in Nuclear Receptor RORγ.

Pham B, Cheng Z, Lopez D, Lindsay R, Foutch D, Majors R Front Mol Biosci. 2022; 9:904445.

PMID: 35782874 PMC: 9240913. DOI: 10.3389/fmolb.2022.904445.


Conformational Changes of RORγ During Response Element Recognition and Coregulator Engagement.

Strutzenberg T, Zhu Y, Novick S, Garcia-Ordonez R, Doebelin C, He Y J Mol Biol. 2021; 433(22):167258.

PMID: 34547329 PMC: 8556364. DOI: 10.1016/j.jmb.2021.167258.


References
1.
Zhang Z, Smith D . Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation. Protein Sci. 1993; 2(4):522-31. PMC: 2142359. DOI: 10.1002/pro.5560020404. View

2.
Marcotte D, Liu Y, Little K, Jones J, Powell N, Wildes C . Structural determinant for inducing RORgamma specific inverse agonism triggered by a synthetic benzoxazinone ligand. BMC Struct Biol. 2016; 16(1):7. PMC: 4888278. DOI: 10.1186/s12900-016-0059-3. View

3.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

4.
Santori F, Huang P, van de Pavert S, Douglass Jr E, Leaver D, Haubrich B . Identification of natural RORγ ligands that regulate the development of lymphoid cells. Cell Metab. 2015; 21(2):286-298. PMC: 4317570. DOI: 10.1016/j.cmet.2015.01.004. View

5.
L Bookout A, Jeong Y, Downes M, Yu R, Evans R, Mangelsdorf D . Anatomical profiling of nuclear receptor expression reveals a hierarchical transcriptional network. Cell. 2006; 126(4):789-99. PMC: 6211849. DOI: 10.1016/j.cell.2006.06.049. View