Whole Genome Sequencing Reveals the Impact of Recent Artificial Selection on Red Sea Bream Reared in Fish Farms

Overview

Journal Sci Rep

Specialty Science

Date 2019 Apr 26

PMID 31019228

Citations 3

Authors

Bo-Hye Nam

DongAhn Yoo

Young-Ok Kim

Jung Youn Park

Younhee Shin

Ga-Hee Shin

Chan-Il Park

Heebal Kim

Woori Kwak

Affiliations

Soon will be listed here.

Abstract

Red sea bream, a popular fish resource in Korea and Japan, is being bred in fish farms of the two countries. It is hypothesized that the genomes of red sea bream are influenced by decades of artificial selection. This study investigates the impact of artificial selection on genomes of red sea bream. Whole genome sequencing was conducted for 40 samples of red sea bream either from Ehime, Nagasaki and Tongyeong fish farms or from the wild. Population stratification based on whole genome data was investigated and the genomic regions of fish farm populations under selection were identified using XP-EHH and relative nucleotide diversity. Gene ontology analysis revealed that different functions were enriched in different fish farms. In conclusion, this study highlights the difference between independently cultured red sea bream populations by showing that influence of artificial selection acted upon completely different genes related to different functions including metabolic and developmental processes.

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