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A Novel 3-hydroxypropionic Acid-inducible Promoter Regulated by the LysR-type Transcriptional Activator Protein MmsR of Pseudomonas Denitrificans

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Journal Sci Rep
Specialty Science
Date 2019 Mar 31
PMID 30926872
Citations 2
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Abstract

MmsR (33.3 kDa) is a putative LysR-type transcriptional activator of Pseudomonas denitrificans. With the help of 3-hydroxypropionic acid (3-HP), an important platform chemical, MmsR positively regulates the expression of mmsA, which encodes methylmalonylsemialdehyde dehydrogenase, the enzyme involved in valine degradation. In the present study, the cellular function of MmsR and its binding to the regulatory DNA sequence of mmsA expression were investigated both in vivo and in vitro. Transcription of the mmsA was enhanced >140-fold in the presence of 3-HP. In the MmsR-responsive promoter region, two operators showing dyad symmetry, designated O and O and centered at the -79 and -28 positions, respectively, were present upstream of the mmsA transcription start site. An electrophoretic mobility shift assay indicated that MmsR binds to both operator sites for transcription activation, probably in cooperative manner. When either O or O or both regions were mutated, the inducibility by the MmsR-3-HP complex was significantly reduced or completely removed, indicating that both sites are required for transcription activation. A 3-HP sensor was developed by connecting the activation of MmsR to a green fluorescent readout. A more than 50-fold induction by 25 mM 3-HP was observed.

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References
1.
Lerche M, Dian C, Round A, Lonneborg R, Brzezinski P, Leonard G . The solution configurations of inactive and activated DntR have implications for the sliding dimer mechanism of LysR transcription factors. Sci Rep. 2016; 6:19988. PMC: 4730206. DOI: 10.1038/srep19988. View

2.
Yim S, Kim T, Hu H, Kim J, Kim B, Lee J . Copy number variations in East-Asian population and their evolutionary and functional implications. Hum Mol Genet. 2009; 19(6):1001-8. PMC: 2830825. DOI: 10.1093/hmg/ddp564. View

3.
Porrua O, Garcia-Jaramillo M, Santero E, Govantes F . The LysR-type regulator AtzR binding site: DNA sequences involved in activation, repression and cyanuric acid-dependent repositioning. Mol Microbiol. 2007; 66(2):410-27. DOI: 10.1111/j.1365-2958.2007.05927.x. View

4.
Reese M . Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput Chem. 2002; 26(1):51-6. DOI: 10.1016/s0097-8485(01)00099-7. View

5.
Zuker M . Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003; 31(13):3406-15. PMC: 169194. DOI: 10.1093/nar/gkg595. View