Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria

Overview

Journal Sensors (Basel)

Publisher MDPI

Specialty Biotechnology

Date 2019 Mar 7

PMID 30836707

Citations 36

Authors

Jasmina Vidic

Priya Vizzini

Marisa Manzano

Devon Kavanaugh

Nalini Ramarao

Milica Zivkovic

Vasa Radonic

Nikola Knezevic

Ioanna Giouroudi

Ivana Gadjanski

Affiliations

Soon will be listed here.

Abstract

Foodborne pathogenic bacteria present a crucial food safety issue. Conventional diagnostic methods are time-consuming and can be only performed on previously produced food. The advancing field of point-of-need diagnostic devices integrating molecular methods, biosensors, microfluidics, and nanomaterials offers new avenues for swift, low-cost detection of pathogens with high sensitivity and specificity. These analyses and screening of food items can be performed during all phases of production. This review presents major developments achieved in recent years in point-of-need diagnostics in land-based sector and sheds light on current challenges in achieving wider acceptance of portable devices in the food industry. Particular emphasis is placed on methods for testing nucleic acids, protocols for portable nucleic acid extraction and amplification, as well as on the means for low-cost detection and read-out signal amplification.

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References

Dong X, Mi X, Wang B, Xu J, Chen H . Signal amplification for DNA detection based on the HRP-functionalized Fe3O4 nanoparticles. Talanta. 2011; 84(2):531-7. DOI: 10.1016/j.talanta.2011.01.060. View

Compton J . Nucleic acid sequence-based amplification. Nature. 1991; 350(6313):91-2. DOI: 10.1038/350091a0. View

Craw P, Balachandran W . Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip. 2012; 12(14):2469-86. DOI: 10.1039/c2lc40100b. View

Justino C, Duarte A, Rocha-Santos T . Critical overview on the application of sensors and biosensors for clinical analysis. Trends Analyt Chem. 2020; 85:36-60. PMC: 7112812. DOI: 10.1016/j.trac.2016.04.004. View

Kim T, Park J, Kim C, Cho Y . Fully integrated lab-on-a-disc for nucleic acid analysis of food-borne pathogens. Anal Chem. 2014; 86(8):3841-8. DOI: 10.1021/ac403971h. View

van der Vliet G, Schukkink R, VAN Gemen B, Schepers P, Klatser P . Nucleic acid sequence-based amplification (NASBA) for the identification of mycobacteria. J Gen Microbiol. 1993; 139(10):2423-9. DOI: 10.1099/00221287-139-10-2423. View

Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N . Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000; 28(12):E63. PMC: 102748. DOI: 10.1093/nar/28.12.e63. View

Liu T, Tang J, Han M, Jiang L . A novel microgravimetric DNA sensor with high sensitivity. Biochem Biophys Res Commun. 2003; 304(1):98-100. DOI: 10.1016/s0006-291x(03)00531-x. View

Uyttendaele M, Bastiaansen A, Debevere J . Evaluation of the NASBA nucleic acid amplification system for assessment of the viability of Campylobacter jejuni. Int J Food Microbiol. 1997; 37(1):13-20. DOI: 10.1016/s0168-1605(97)00039-1. View

10.

Glasset B, Herbin S, Guillier L, Cadel-Six S, Vignaud M, Grout J . Bacillus cereus-induced food-borne outbreaks in France, 2007 to 2014: epidemiology and genetic characterisation. Euro Surveill. 2016; 21(48). PMC: 5388111. DOI: 10.2807/1560-7917.ES.2016.21.48.30413. View

11.

Vinayaka A, Ngo T, Kant K, Engelsmann P, Dave V, Shahbazi M . Rapid detection of Salmonella enterica in food samples by a novel approach with combination of sample concentration and direct PCR. Biosens Bioelectron. 2018; 129:224-230. DOI: 10.1016/j.bios.2018.09.078. View

12.

Gill P, Alvandi A, Abdul-Tehrani H, Sadeghizadeh M . Colorimetric detection of Helicobacter pylori DNA using isothermal helicase-dependent amplification and gold nanoparticle probes. Diagn Microbiol Infect Dis. 2008; 62(2):119-24. DOI: 10.1016/j.diagmicrobio.2008.05.003. View

13.

Chitnis G, Ding Z, Chang C, Savran C, Ziaie B . Laser-treated hydrophobic paper: an inexpensive microfluidic platform. Lab Chip. 2011; 11(6):1161-5. DOI: 10.1039/c0lc00512f. View

14.

Li Y, Fan P, Zhou S, Zhang L . Loop-mediated isothermal amplification (LAMP): A novel rapid detection platform for pathogens. Microb Pathog. 2017; 107:54-61. DOI: 10.1016/j.micpath.2017.03.016. View

15.

Fernandes A, Duarte C, Cardoso F, Bexiga R, Cardoso S, Freitas P . Lab-on-chip cytometry based on magnetoresistive sensors for bacteria detection in milk. Sensors (Basel). 2014; 14(8):15496-524. PMC: 4179045. DOI: 10.3390/s140815496. View

16.

Li D, Yan Y, Wieckowska A, Willner I . Amplified electrochemical detection of DNA through the aggregation of Au nanoparticles on electrodes and the incorporation of methylene blue into the DNA-crosslinked structure. Chem Commun (Camb). 2007; (34):3544-6. DOI: 10.1039/b704731b. View

17.

Zhong M, Yang L, Yang H, Cheng C, Deng W, Tan Y . An electrochemical immunobiosensor for ultrasensitive detection of Escherichia coli O157:H7 using CdS quantum dots-encapsulated metal-organic frameworks as signal-amplifying tags. Biosens Bioelectron. 2018; 126:493-500. DOI: 10.1016/j.bios.2018.11.001. View

18.

Imai K, Tarumoto N, Misawa K, Runtuwene L, Sakai J, Hayashida K . A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer. BMC Infect Dis. 2017; 17(1):621. PMC: 5598014. DOI: 10.1186/s12879-017-2718-9. View

19.

Mertens K, Freund L, Schmoock G, Hansel C, Melzer F, Elschner M . Comparative evaluation of eleven commercial DNA extraction kits for real-time PCR detection of Bacillus anthracis spores in spiked dairy samples. Int J Food Microbiol. 2013; 170:29-37. DOI: 10.1016/j.ijfoodmicro.2013.10.022. View

20.

Blais B, Turner G, Sooknanan R, Malek L . A nucleic acid sequence-based amplification system for detection of Listeria monocytogenes hlyA sequences. Appl Environ Microbiol. 1997; 63(1):310-3. PMC: 168321. DOI: 10.1128/aem.63.1.310-313.1997. View