Evolutionary Insight into the Clock-Associated PRR5 Transcriptional Network of Flowering Plants
Affiliations
Circadian clocks regulate the daily timing of metabolic, physiological, and behavioral activities to adapt organisms to day-night cycles. In the model plant Arabidopsis thaliana, transcript-translational feedback loops (TTFL) constitute the circadian clock, which is conserved among flowering plants. Arabidopsis TTFL directly regulates key genes in the clock-output pathways, whereas the pathways for clock-output control in other plants is largely unknown. Here, we propose that the transcriptional networks of clock-associated pseudo-response regulators (PRRs) are conserved among flowering plants. Most PRR genes from Arabidopsis, poplar, and rice encode potential transcriptional repressors. The PRR5-target-like gene group includes genes that encode key transcription factors for flowering time regulation, cell elongation, and chloroplast gene expression. The 5'-upstream regions of PRR5-target-like genes from poplar and rice tend to contain G-box-like elements that are potentially recognized by PRRs in vivo as has been shown in Arabidopsis. Expression of PRR5-target-like genes from poplar and rice tends to decrease when PRRs are expressed, possibly suggesting that the transcriptional network of PRRs is evolutionarily conserved in these plants.
Flowering genes identification, network analysis, and database construction for 837 plants.
Wu T, Liu Z, Yu T, Zhou R, Yang Q, Cao R Hortic Res. 2024; 11(4):uhae013.
PMID: 38585015 PMC: 10995624. DOI: 10.1093/hr/uhae013.
Takagi H, Hempton A, Imaizumi T Plant Commun. 2023; 4(3):100552.
PMID: 36681863 PMC: 10203454. DOI: 10.1016/j.xplc.2023.100552.
Dai Z, Yan P, He S, Jia L, Wang Y, Liu Q Int J Mol Sci. 2022; 23(24).
PMID: 36555491 PMC: 9785306. DOI: 10.3390/ijms232415848.
Fillable and unfillable gaps in plant transcriptome under field and controlled environments.
Hashida Y, Tezuka A, Nomura Y, Kamitani M, Kashima M, Kurita Y Plant Cell Environ. 2022; 45(8):2410-2427.
PMID: 35610174 PMC: 9544781. DOI: 10.1111/pce.14367.
Ye Y, Liu Y, Li X, Chen Q, Zhang Y, Luo Y Int J Genomics. 2021; 2021:5572076.
PMID: 34235213 PMC: 8216796. DOI: 10.1155/2021/5572076.