Ordino: a Visual Cancer Analysis Tool for Ranking and Exploring Genes, Cell Lines and Tissue Samples

Overview

Journal Bioinformatics

Publisher Oxford University Press

Specialty Biology

Date 2019 Jan 19

PMID 30657871

Citations 8

Authors

Marc Streit

Samuel Gratzl

Holger Stitz

Andreas Wernitznig

Thomas Zichner

Christian Haslinger

Affiliations

Soon will be listed here.

Abstract

Summary: Ordino is a web-based analysis tool for cancer genomics that allows users to flexibly rank, filter and explore genes, cell lines and tissue samples based on pre-loaded data, including The Cancer Genome Atlas, the Cancer Cell Line Encyclopedia and manually uploaded information. Interactive tabular data visualization that facilitates the user-driven prioritization process forms a core component of Ordino. Detail views of selected items complement the exploration. Findings can be stored, shared and reproduced via the integrated session management.

Availability And Implementation: Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0.

Supplementary Information: Supplementary data are available at Bioinformatics online.

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