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Molecular Evolution of the Escherichia Coli Chromosome. II. Clonal Segments

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Journal Genetics
Specialty Genetics
Date 1988 Oct 1
PMID 3058547
Citations 19
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Abstract

Remarkable sequence similarities in the trp region among Escherichia coli strains of diverse natural origins imply the existence of worldwide clones of very recent origin. This in turn implies a low rate of fixation of new universally favorable alleles, which carry adjacent stretches of chromosome to high frequency. These clonal segments begin as entire chromosomes; recombination shortens them progressively by substituting less closely related homologous DNA. The rate of this recombination, comprising the introduction of a homologous chromosomal fragment to a cell and the replacement of part of the original chromosome, is estimated from observations.

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References
1.
Fiers W, Contreras R, Duerinck F, Haegeman G, Iserentant D, Merregaert J . Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene. Nature. 1976; 260(5551):500-7. DOI: 10.1038/260500a0. View

2.
Selander R, Levin B . Genetic diversity and structure in Escherichia coli populations. Science. 1980; 210(4469):545-7. DOI: 10.1126/science.6999623. View

3.
Yanofsky C, Platt T, Crawford I, Nichols B, Christie G, Horowitz H . The complete nucleotide sequence of the tryptophan operon of Escherichia coli. Nucleic Acids Res. 1981; 9(24):6647-68. PMC: 327632. DOI: 10.1093/nar/9.24.6647. View

4.
Levin B . Periodic selection, infectious gene exchange and the genetic structure of E. coli populations. Genetics. 1981; 99(1):1-23. PMC: 1214481. DOI: 10.1093/genetics/99.1.1. View

5.
Orkin S, Kazazian Jr H . The mutation and polymorphism of the human beta-globin gene and its surrounding DNA. Annu Rev Genet. 1984; 18:131-71. DOI: 10.1146/annurev.ge.18.120184.001023. View