Abdullah L, Emiliani F, Vaidya C, Stuart H, Musial S, Kolling F
Immunity. 2025; 58(3):601-615.e9.
PMID: 40020673
PMC: 11903169.
DOI: 10.1016/j.immuni.2025.02.001.
Seo K, Choi J
Genomics Inform. 2025; 23(1):6.
PMID: 39994831
PMC: 11853700.
DOI: 10.1186/s44342-024-00034-z.
Feng X, Huo M, Li H, Yang Y, Jiang Y, He L
Brief Bioinform. 2025; 26(1).
PMID: 39883514
PMC: 11781202.
DOI: 10.1093/bib/bbaf030.
Wang M, Fan W, Wu T, Li M
Bioinformatics. 2025; .
PMID: 39880376
PMC: 11784750.
DOI: 10.1093/bioinformatics/btaf022.
Deng H, Li Y, Wang G, Li R
Biology (Basel). 2025; 14(1).
PMID: 39857297
PMC: 11761943.
DOI: 10.3390/biology14010067.
Immunopeptidomics for autoimmunity: unlocking the chamber of immune secrets.
Arshad S, Cameron B, Joglekar A
NPJ Syst Biol Appl. 2025; 11(1):10.
PMID: 39833247
PMC: 11747513.
DOI: 10.1038/s41540-024-00482-x.
Diversity of TCR repertoire predicts recurrence after CRT followed by durvalumab in patients with NSCLC.
Shirasawa M, Yoshida T, Matsutani T, Takeyasu Y, Goto N, Yagishita S
NPJ Precis Oncol. 2025; 9(1):17.
PMID: 39814862
PMC: 11735630.
DOI: 10.1038/s41698-024-00781-w.
The Evolving T Cell Receptor Recognition Code: The Rules Are More Like Guidelines.
Gray G, Chukwuma P, Eldaly B, Perera W, Brambley C, Rosales T
Immunol Rev. 2025; 329(1):e13439.
PMID: 39804137
PMC: 11771984.
DOI: 10.1111/imr.13439.
Learning predictive signatures of HLA type from T-cell repertoires.
Ruiz Ortega M, Pogorelyy M, Minervina A, Thomas P, Mora T, Walczak A
PLoS Comput Biol. 2025; 21(1):e1012724.
PMID: 39761303
PMC: 11737854.
DOI: 10.1371/journal.pcbi.1012724.
Characteristics of peripheral immune response induced by large-vessel occlusion in patients with acute ischemic stroke.
Ma L, Sun B, Fan C, Xiao J, Geng M, Liu J
Front Neurol. 2024; 15:1512720.
PMID: 39719974
PMC: 11666556.
DOI: 10.3389/fneur.2024.1512720.
Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data.
Tian R, Yu Z, Xue Z, Wu J, Wu L, Cai S
Genomics Proteomics Bioinformatics. 2024; 22(6).
PMID: 39666949
PMC: 11846667.
DOI: 10.1093/gpbjnl/qzae086.
Multiomics Reveals the Immunologic Features and the Immune Checkpoint Blockade Potential of Colorectal Medullary Carcinoma.
Liu C, Zou H, Ruan Y, Fang L, Wang B, Cui L
Clin Cancer Res. 2024; 31(4):773-786.
PMID: 39651997
PMC: 11831109.
DOI: 10.1158/1078-0432.CCR-24-2505.
Chemical-Specific T Cell Tests Aim to Bridge a Gap in Skin Sensitization Evaluation.
Fritsch N, Aparicio-Soto M, Curato C, Riedel F, Thierse H, Luch A
Toxics. 2024; 12(11).
PMID: 39590982
PMC: 11598016.
DOI: 10.3390/toxics12110802.
Local and Global Variability in Developing Human T-Cell Repertoires.
Isacchini G, Quiniou V, Barennes P, Mhanna V, Vantomme H, Stys P
PRX Life. 2024; 2(1).
PMID: 39582620
PMC: 11583800.
DOI: 10.1103/prxlife.2.013011.
tcrBLOSUM: an amino acid substitution matrix for sensitive alignment of distant epitope-specific TCRs.
Postovskaya A, Vercauteren K, Meysman P, Laukens K
Brief Bioinform. 2024; 26(1).
PMID: 39576224
PMC: 11583439.
DOI: 10.1093/bib/bbae602.
In situ cell-surface conformation of the TCR-CD3 signaling complex.
Natarajan A, Velmurugu Y, Becerra Flores M, Dibba F, Beesam S, Kikvadze S
EMBO Rep. 2024; 25(12):5719-5742.
PMID: 39511422
PMC: 11624261.
DOI: 10.1038/s44319-024-00314-3.
IMGT/RobustpMHC: robust training for class-I MHC peptide binding prediction.
Kushwaha A, Duroux P, Giudicelli V, Todorov K, Kossida S
Brief Bioinform. 2024; 25(6).
PMID: 39504482
PMC: 11540059.
DOI: 10.1093/bib/bbae552.
Efficient multiplex non-viral engineering and expansion of polyclonal γδ CAR-T cells for immunotherapy.
Bridge J, Johnson M, Kim J, Wenthe S, Krueger J, Wick B
bioRxiv. 2024; .
PMID: 39464114
PMC: 11507710.
DOI: 10.1101/2024.09.03.611042.
Predictability of antigen binding based on short motifs in the antibody CDRH3.
Scheffer L, Reber E, Mehta B, Pavlovic M, Chernigovskaya M, Richardson E
Brief Bioinform. 2024; 25(6).
PMID: 39438077
PMC: 11495870.
DOI: 10.1093/bib/bbae537.
PCR GeneScan Analysis of Rearranged Immunoglobulin or T-Cell Receptor Genes for Clonality Diagnostics in Suspect Lymphoproliferations.
Boone E, Groenen P, Langerak A
Methods Mol Biol. 2024; 2865:77-102.
PMID: 39424721
DOI: 10.1007/978-1-0716-4188-0_4.