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Neurotrauma As a Big-data Problem

Overview
Specialty Neurology
Date 2018 Nov 1
PMID 30379703
Citations 14
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Abstract

Purpose Of Review: The field of neurotrauma research faces a reproducibility crisis. In response, research leaders in traumatic brain injury (TBI) and spinal cord injury (SCI) are leveraging data curation and analytics methods to encourage transparency, and improve the rigor and reproducibility. Here we review the current challenges and opportunities that come from efforts to transform neurotrauma's big data to knowledge.

Recent Findings: Three parallel movements are driving data-driven-discovery in neurotrauma. First, large multicenter consortia are collecting large quantities of neurotrauma data, refining common data elements (CDEs) that can be used across studies. Investigators are now testing the validity of CDEs in diverse research settings. Second, data sharing initiatives are working to make neurotrauma data findable, accessible, interoperable, and reusable (FAIR). These efforts are reflected by recent open data repository projects for preclinical and clinical neurotrauma. Third, machine learning analytics are allowing researchers to uncover novel data-driven-hypotheses and test new therapeutics in multidimensional outcome space.

Summary: We are on the threshold of a new era in data collection, curation, and analysis. The next phase of big data in neurotrauma research will require responsible data stewardship, a culture of data-sharing, and the illumination of 'dark data'.

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References
1.
Yue J, Vassar M, Lingsma H, Cooper S, Okonkwo D, Valadka A . Transforming research and clinical knowledge in traumatic brain injury pilot: multicenter implementation of the common data elements for traumatic brain injury. J Neurotrauma. 2013; 30(22):1831-44. PMC: 3814815. DOI: 10.1089/neu.2013.2970. View

2.
Ekblom R, Wolf J . A field guide to whole-genome sequencing, assembly and annotation. Evol Appl. 2015; 7(9):1026-42. PMC: 4231593. DOI: 10.1111/eva.12178. View

3.
Yuh E, Cooper S, Ferguson A, Manley G . Quantitative CT improves outcome prediction in acute traumatic brain injury. J Neurotrauma. 2011; 29(5):735-46. PMC: 3303103. DOI: 10.1089/neu.2011.2008. View

4.
Haefeli J, Ferguson A, Bingham D, Orr A, Won S, Lam T . A data-driven approach for evaluating multi-modal therapy in traumatic brain injury. Sci Rep. 2017; 7:42474. PMC: 5311970. DOI: 10.1038/srep42474. View

5.
Nelson L, Ranson J, Ferguson A, Giacino J, Okonkwo D, Valadka A . Validating Multidimensional Outcome Assessment Using the TBI Common Data Elements: An Analysis of the TRACK-TBI Pilot Sample. J Neurotrauma. 2017; . PMC: 5678361. DOI: 10.1089/neu.2017.5139. View