» Articles » PMID: 30269177

Emerging Evolutionary Paradigms in Antibiotic Discovery

Overview
Specialty Biotechnology
Date 2018 Oct 1
PMID 30269177
Citations 42
Authors
Affiliations
Soon will be listed here.
Abstract

Antibiotics revolutionized medicine and remain its cornerstone. Despite their global importance and the continuous threat of resistant pathogens, few antibiotics have been discovered in recent years. Natural products, especially the secondary metabolites of Actinobacteria, have been the traditional discovery source of antibiotics. In nature, the chemistry of antibiotic natural products is shaped by the unique evolution and ecology of their producing organisms, yet these influences remain largely unknown. Here, we highlight the ecology of antibiotics employed by microbes in defensive symbioses and review the evolutionary processes underlying the chemical diversity and activity of microbe-derived antibiotics, including the dynamics of vertical and lateral transmission of biosynthetic pathways and the evolution of efficacy, targeting specificity, and toxicity. We argue that a deeper understanding of the ecology and evolution of microbial interactions and the metabolites that mediate them will allow for an alternative, rational approach to discover new antibiotics.

Citing Articles

Upper respiratory microbial communities of healthy populations are shaped by niche and age.

Zelasko S, Swaney M, Sandstrom S, Davenport T, Seroogy C, Gern J Microbiome. 2024; 12(1):206.

PMID: 39425237 PMC: 11490146. DOI: 10.1186/s40168-024-01940-8.


Advances, opportunities, and challenges in methods for interrogating the structure activity relationships of natural products.

Ancajas C, Oyedele A, Butt C, Walker A Nat Prod Rep. 2024; 41(10):1543-1578.

PMID: 38912779 PMC: 11484176. DOI: 10.1039/d4np00009a.


Critical analysis of polycyclic tetramate macrolactam biosynthetic gene cluster phylogeny and functional diversity.

Harper C, Day A, Tsingos M, Ding E, Zeng E, Stumpf S Appl Environ Microbiol. 2024; 90(6):e0060024.

PMID: 38771054 PMC: 11218653. DOI: 10.1128/aem.00600-24.


Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes.

Zhang Z, Zhang L, Zhang L, Chu H, Zhou J, Ju F mSystems. 2024; 9(4):e0126323.

PMID: 38470142 PMC: 11019929. DOI: 10.1128/msystems.01263-23.


Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.

de Crecy-Lagard V, Hutinet G, Cediel-Becerra J, Yuan Y, Zallot R, Chevrette M Microbiol Mol Biol Rev. 2024; 88(1):e0019923.

PMID: 38421302 PMC: 10966956. DOI: 10.1128/mmbr.00199-23.


References
1.
Currie C . A community of ants, fungi, and bacteria: a multilateral approach to studying symbiosis. Annu Rev Microbiol. 2001; 55:357-80. DOI: 10.1146/annurev.micro.55.1.357. View

2.
Metsa-Ketela M, Halo L, Munukka E, Hakala J, Mantsala P, Ylihonko K . Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various streptomyces species. Appl Environ Microbiol. 2002; 68(9):4472-9. PMC: 124067. DOI: 10.1128/AEM.68.9.4472-4479.2002. View

3.
Goh E, Yim G, Tsui W, McClure J, Surette M, Davies J . Transcriptional modulation of bacterial gene expression by subinhibitory concentrations of antibiotics. Proc Natl Acad Sci U S A. 2002; 99(26):17025-30. PMC: 139263. DOI: 10.1073/pnas.252607699. View

4.
Currie C, Wong B, Stuart A, Schultz T, Rehner S, Mueller U . Ancient tripartite coevolution in the attine ant-microbe symbiosis. Science. 2003; 299(5605):386-8. DOI: 10.1126/science.1078155. View

5.
Challis G, Hopwood D . Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc Natl Acad Sci U S A. 2003; 100 Suppl 2:14555-61. PMC: 304118. DOI: 10.1073/pnas.1934677100. View