» Articles » PMID: 30044530

Solid-Phase Gene Synthesis for Mutant Library Construction: The Future of Directed Evolution?

Overview
Journal Chembiochem
Specialty Biochemistry
Date 2018 Jul 26
PMID 30044530
Citations 6
Authors
Affiliations
Soon will be listed here.
Abstract

Directed evolution of stereo- and regioselective enzymes as catalysts in organic chemistry and biotechnology constitutes a complementary alternative to selective transition-metal catalysts and organocatalysts. Saturation mutagenesis at sites lining the binding pocket has emerged as a key method in this endeavor, but it suffers from amino acid bias, which reduces the quality of the library at the DNA level and, thus, at the protein level. Chemical solid-phase gene synthesis for library construction offers a solution to this fundamental problem, and the Sloning and Twist platforms are two possible options. This concept article analyzes these approaches and compares them to traditional PCR-based saturation mutagenesis; the superior commercial Twist technique shows almost no bias.

Citing Articles

In vitro generation of genetic diversity for directed evolution by error-prone artificial DNA synthesis.

Wang B, Liu Y, Bai X, Tian H, Wang L, Feng M Commun Biol. 2024; 7(1):628.

PMID: 38789612 PMC: 11126579. DOI: 10.1038/s42003-024-06340-0.


Making Enzymes Suitable for Organic Chemistry by Rational Protein Design.

Reetz M Chembiochem. 2022; 23(14):e202200049.

PMID: 35389556 PMC: 9401064. DOI: 10.1002/cbic.202200049.


Synthetic DNA Libraries for Protein Engineering Toward Process Improvement in Drug Synthesis.

Tavanti M Methods Mol Biol. 2021; 2397:33-45.

PMID: 34813058 DOI: 10.1007/978-1-0716-1826-4_3.


Saturation Mutagenesis for Phenylalanine Ammonia Lyases of Enhanced Catalytic Properties.

Tomoiaga R, Tork S, Horvath I, Filip A, Nagy L, Bencze L Biomolecules. 2020; 10(6).

PMID: 32486192 PMC: 7355458. DOI: 10.3390/biom10060838.


Split & mix assembly of DNA libraries for ultrahigh throughput on-bead screening of functional proteins.

Lindenburg L, Huovinen T, van de Wiel K, Herger M, Snaith M, Hollfelder F Nucleic Acids Res. 2020; 48(11):e63.

PMID: 32383757 PMC: 7293038. DOI: 10.1093/nar/gkaa270.