Three-dimensional Structure of the Ribonuclease T1 X 3'-guanylic Acid Complex at 2.6 A Resolution
Overview
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The mother enzyme of RNase T1 was co-crystallized with its natural product, 3'-GMP at pH 4.0. The X-ray structure of this complex was refined with 2432 reflections in the 5.4-2.6 A range using a stereochemical restrained method (conventional R = 27.4%). The overall polypeptide chain folding is very similar in the secondary structure elements to the RNase T1 in the complex with 2'-GMP crystallized also at pH 4.0, but larger conformational changes occur in the loop regions. The base recognition scheme is identical in both complexes but in RNase T1 X 3'-GMP, the ribose phosphate is not seen in the electron density, probably due to static disorder.
Tryptophan phosphorescence of ribonuclease T1 as a probe of protein flexibility.
Gonnelli M, Puntoni A, Strambini G J Fluoresc. 2013; 2(3):157-65.
PMID: 24241626 DOI: 10.1007/BF00866930.
Fushman D, Weisemann R, Thuring H, Ruterjans H J Biomol NMR. 2012; 4(1):61-78.
PMID: 22911159 DOI: 10.1007/BF00178336.
Picosecond time-resolved fluorescence of ribonuclease T1. A pH and substrate analogue binding study.
Chen L, Longworth J, Fleming G Biophys J. 1987; 51(6):865-73.
PMID: 3038204 PMC: 1330020. DOI: 10.1016/S0006-3495(87)83414-8.
Ikehara M, Ohtsuka E, Tokunaga T, Nishikawa S, Uesugi S, Tanaka T Proc Natl Acad Sci U S A. 1986; 83(13):4695-9.
PMID: 3014504 PMC: 323808. DOI: 10.1073/pnas.83.13.4695.
Molecular dynamics simulations of ribonuclease T1. Effect of solvent on the interaction with 2'GMP.
MacKerell Jr A, Rigler R, Nilsson L, Heinemann U, Saenger W Eur Biophys J. 1988; 16(5):287-97.
PMID: 2853669 DOI: 10.1007/BF00254065.