Developing MRNA-based Biomarkers from Formalin-fixed Paraffin-embedded Tissue
Overview
Authors
Affiliations
Cancer is a complex and heterogeneous disease which is one of the leading causes of death in Western civilisations. Thus, oncology is viewed as a primary focus for personalized medicine. It is recognised that cancer treatment needs to be better tailored in order to improve patient outcome. Patient tumor samples will be required to characterize cancer at a molecular level and identify where there may be disease subgroups that should be treated differently. The use of formalin-fixed paraffin-embedded tissue is important for enabling such studies. In this report, we focus on the challenges that have been faced to date along with the technological developments that have now made this possible. We also highlight the impact this may have on drug and diagnostic development.
Straightforward and sensitive RT-qPCR based gene expression analysis of FFPE samples.
Zeka F, Vanderheyden K, Smet E, Cuvelier C, Mestdagh P, Vandesompele J Sci Rep. 2016; 6:21418.
PMID: 26898768 PMC: 4761903. DOI: 10.1038/srep21418.
Kim S, Lee J, Hong M, Do I, Kang S, Ha S PLoS One. 2014; 9(11):e111693.
PMID: 25372287 PMC: 4221102. DOI: 10.1371/journal.pone.0111693.
Thomas M, Poignee-Heger M, Weisser M, Wessner S, Belousov A J Clin Bioinforma. 2013; 3(1):10.
PMID: 23641797 PMC: 3660273. DOI: 10.1186/2043-9113-3-10.