» Articles » PMID: 29681510

Germline Genetic IKZF1 Variation and Predisposition to Childhood Acute Lymphoblastic Leukemia

Abstract

Somatic genetic alterations of IKZF1, which encodes the lymphoid transcription factor IKAROS, are common in high-risk B-progenitor acute lymphoblastic leukemia (ALL) and are associated with poor prognosis. Such alterations result in the acquisition of stem cell-like features, overexpression of adhesion molecules causing aberrant cell-cell and cell-stroma interaction, and decreased sensitivity to tyrosine kinase inhibitors. Here we report coding germline IKZF1 variation in familial childhood ALL and 0.9% of presumed sporadic B-ALL, identifying 28 unique variants in 45 children. The majority of variants adversely affected IKZF1 function and drug responsiveness of leukemic cells. These results identify IKZF1 as a leukemia predisposition gene, and emphasize the importance of germline genetic variation in the development of both familial and sporadic ALL.

Citing Articles

with Mycovirus as an Etiologic Factor for Acute Leukemias in Susceptible Individuals: Evidence and Discussion.

Tebbi C, Sahakian E, Shah B, Yan J, Mediavilla-Varela M, Patel S Biomedicines. 2025; 13(2).

PMID: 40002901 PMC: 11853382. DOI: 10.3390/biomedicines13020488.


Status of IKZF1 Deletions in Diagnose and Relapsed Pediatric B-ALL Patients.

Erbilgin Y, Firtina S, Kirat E, Khodzhaev K, Karakas Z, Unuvar A Biochem Genet. 2025; .

PMID: 39786526 DOI: 10.1007/s10528-024-11018-7.


Re-envisioning genetic predisposition to childhood and adolescent cancers.

Kratz C Nat Rev Cancer. 2024; 25(2):109-128.

PMID: 39627375 DOI: 10.1038/s41568-024-00775-7.


Heterogeneity of IKZF1 genomic alterations and risk of relapse in childhood B-cell precursor acute lymphoblastic leukemia.

Mullighan C, Wangondu R, Ashcraft E, Chang T, Roberts K, Brady S Res Sq. 2024; .

PMID: 39606455 PMC: 11601832. DOI: 10.21203/rs.3.rs-5292018/v1.


Conserved helical motifs in the IKZF1 disordered region mediate NuRD interaction and transcriptional repression.

Zhang T, Wang Y, Montoya A, Patrascan I, Nebioglu N, Pallikonda H Blood. 2024; 145(4):422-437.

PMID: 39437550 PMC: 7617475. DOI: 10.1182/blood.2024024787.


References
1.
Mullighan C, Miller C, Radtke I, Phillips L, Dalton J, Ma J . BCR-ABL1 lymphoblastic leukaemia is characterized by the deletion of Ikaros. Nature. 2008; 453(7191):110-4. DOI: 10.1038/nature06866. View

2.
Perez-Andreu V, Roberts K, Harvey R, Yang W, Cheng C, Pei D . Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse. Nat Genet. 2013; 45(12):1494-8. PMC: 4039076. DOI: 10.1038/ng.2803. View

3.
Karol S, Larsen E, Cheng C, Cao X, Yang W, Ramsey L . Genetics of ancestry-specific risk for relapse in acute lymphoblastic leukemia. Leukemia. 2017; 31(6):1325-1332. PMC: 5462853. DOI: 10.1038/leu.2017.24. View

4.
Lek M, Karczewski K, Minikel E, Samocha K, Banks E, Fennell T . Analysis of protein-coding genetic variation in 60,706 humans. Nature. 2016; 536(7616):285-91. PMC: 5018207. DOI: 10.1038/nature19057. View

5.
Iacobucci I, Iraci N, Messina M, Lonetti A, Chiaretti S, Valli E . IKAROS deletions dictate a unique gene expression signature in patients with adult B-cell acute lymphoblastic leukemia. PLoS One. 2012; 7(7):e40934. PMC: 3405023. DOI: 10.1371/journal.pone.0040934. View