Gao Y, Wang H, Zhou J, Yang Y
Curr Res Struct Biol. 2025; 9:100163.
PMID: 39867105
PMC: 11761317.
DOI: 10.1016/j.crstbi.2024.100163.
Rose A, Sehnal D, Goodsell D, Autin L
Protein Sci. 2024; 33(10):e5177.
PMID: 39291955
PMC: 11409463.
DOI: 10.1002/pro.5177.
Rose A, Sehnal D, Goodsell D, Autin L
bioRxiv. 2024; .
PMID: 39282403
PMC: 11398308.
DOI: 10.1101/2024.09.02.610826.
Chen Z, Wang Z, Cao Y, Shi X, Xu B, Li X
Food Chem X. 2024; 23:101742.
PMID: 39253011
PMC: 11381829.
DOI: 10.1016/j.fochx.2024.101742.
Spackova A, Bazgier V, Racek T, Sehnal D, Svobodova R, Berka K
Methods Mol Biol. 2024; 2836:219-233.
PMID: 38995543
DOI: 10.1007/978-1-0716-4007-4_12.
From complex data to clear insights: visualizing molecular dynamics trajectories.
Belghit H, Spivak M, Dauchez M, Baaden M, Jonquet-Prevoteau J
Front Bioinform. 2024; 4:1356659.
PMID: 38665177
PMC: 11043564.
DOI: 10.3389/fbinf.2024.1356659.
HumanLectome, an update of UniLectin for the annotation and prediction of human lectins.
Schnider B, MRad Y, El Ahmadie J, de Brevern A, Imberty A, Lisacek F
Nucleic Acids Res. 2023; 52(D1):D1683-D1693.
PMID: 37889052
PMC: 10767822.
DOI: 10.1093/nar/gkad905.
DAIKON: A Data Acquisition, Integration, and Knowledge Capture Web Application for Target-Based Drug Discovery.
Rath S, Panda S, Sacchettini J, Berthel S
ACS Pharmacol Transl Sci. 2023; 6(7):1043-1051.
PMID: 37470023
PMC: 10353056.
DOI: 10.1021/acsptsci.3c00034.
NucEnvDB: A Database of Nuclear Envelope Proteins and Their Interactions.
Baltoumas F, Sofras D, Apostolakou A, Litou Z, Iconomidou V
Membranes (Basel). 2023; 13(1).
PMID: 36676869
PMC: 9861991.
DOI: 10.3390/membranes13010062.
Naview: A d3.js Based JavaScript Library for Drawing and Annotating Voltage-Gated Sodium Channels Membrane Diagrams.
Afonso M, Da Fonseca Junior N, Miranda T, Bleicher L
Front Bioinform. 2022; 2:774417.
PMID: 36304314
PMC: 9580940.
DOI: 10.3389/fbinf.2022.774417.
Using FPbase: The Fluorescent Protein Database.
Lambert T
Methods Mol Biol. 2022; 2564:1-45.
PMID: 36107335
DOI: 10.1007/978-1-0716-2667-2_1.
RNAloops: a database of RNA multiloops.
Wiedemann J, Kaczor J, Milostan M, Zok T, Blazewicz J, Szachniuk M
Bioinformatics. 2022; 38(17):4200-4205.
PMID: 35809063
PMC: 9438955.
DOI: 10.1093/bioinformatics/btac484.
GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes.
Malladi S, Powell H, David A, Islam S, Copeland M, Kundrotas P
J Mol Biol. 2022; 434(11):167608.
PMID: 35662458
PMC: 9188266.
DOI: 10.1016/j.jmb.2022.167608.
ONQUADRO: a database of experimentally determined quadruplex structures.
Zok T, Kraszewska N, Miskiewicz J, Pielacinska P, Zurkowski M, Szachniuk M
Nucleic Acids Res. 2022; 50(D1):D253-D258.
PMID: 34986600
PMC: 8728301.
DOI: 10.1093/nar/gkab1118.
RCSB Protein Data Bank resources for structure-facilitated design of mRNA vaccines for existing and emerging viral pathogens.
Goodsell D, Burley S
Structure. 2021; 30(1):55-68.e2.
PMID: 34739839
PMC: 8567414.
DOI: 10.1016/j.str.2021.10.008.
PeptideShaker Online: A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data.
Farag Y, Horro C, Vaudel M, Barsnes H
J Proteome Res. 2021; 20(12):5419-5423.
PMID: 34709836
PMC: 8650087.
DOI: 10.1021/acs.jproteome.1c00678.
An Interactive View of Glycosylation.
Mariethoz J, Alocci D, Karlsson N, Packer N, Lisacek F
Methods Mol Biol. 2021; 2370:41-65.
PMID: 34611864
DOI: 10.1007/978-1-0716-1685-7_3.
PncsHub: a platform for annotating and analyzing non-classically secreted proteins in Gram-positive bacteria.
Dai W, Li J, Li Q, Cai J, Su J, Stubenrauch C
Nucleic Acids Res. 2021; 50(D1):D848-D857.
PMID: 34551435
PMC: 8728121.
DOI: 10.1093/nar/gkab814.
NAChRDB: A Web Resource of Structure-Function Annotations to Unravel the Allostery of Nicotinic Acetylcholine Receptors.
Chareshneu A, Pant P, Tristao Ramos R, Sehnal D, Gokbel T, Ionescu C
ACS Omega. 2021; 6(36):23023-23027.
PMID: 34549102
PMC: 8444218.
DOI: 10.1021/acsomega.1c00817.
3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories.
Bayarri G, Hospital A, Orozco M
Front Mol Biosci. 2021; 8:726232.
PMID: 34485386
PMC: 8414788.
DOI: 10.3389/fmolb.2021.726232.
