» Articles » PMID: 29043379

Copy Number Variation and Disease Resistance in Plants

Overview
Publisher Springer
Specialty Genetics
Date 2017 Oct 19
PMID 29043379
Citations 28
Authors
Affiliations
Soon will be listed here.
Abstract

Plant genome diversity varies from single nucleotide polymorphisms to large-scale deletions, insertions, duplications, or re-arrangements. These re-arrangements of sequences resulting from duplication, gains or losses of DNA segments are termed copy number variations (CNVs). During the last decade, numerous studies have emphasized the importance of CNVs as a factor affecting human phenotype; in particular, CNVs have been associated with risks for several severe diseases. In plants, the exploration of the extent and role of CNVs in resistance against pathogens and pests is just beginning. Since CNVs are likely to be associated with disease resistance in plants, an understanding of the distribution of CNVs could assist in the identification of novel plant disease-resistance genes. In this paper, we review existing information about CNVs; their importance, role and function, as well as their association with disease resistance in plants.

Citing Articles

Genome-wide identification of copy number variation in diverse black pepper accessions.

Das P, Sheeja T, Saha B, Fayad A, Chandra T, Angadi U Planta. 2025; 261(4):81.

PMID: 40057659 DOI: 10.1007/s00425-025-04658-5.


Advances in the molecular mechanism of grapevine resistance to fungal diseases.

Li Z, Wu R, Guo F, Wang Y, Nick P, Wang X Mol Hortic. 2025; 5(1):1.

PMID: 39743511 PMC: 11694456. DOI: 10.1186/s43897-024-00119-x.


Genetic dissection of resistance to Phytophthora sojae using genome-wide association and linkage analysis in soybean [Glycine max (L.) Merr.].

You H, Jang I, Moon J, Kang I, Kim J, Kang S Theor Appl Genet. 2024; 137(12):263.

PMID: 39516394 DOI: 10.1007/s00122-024-04771-1.


Genetic diversity, disease resistance, and environmental adaptation of Arachis duranensis L.: New insights from landscape genomics.

Massa A, Sobolev V, Faustinelli P, Tallury S, Thomas Stalker H, Lamb M PLoS One. 2024; 19(4):e0299992.

PMID: 38625995 PMC: 11020403. DOI: 10.1371/journal.pone.0299992.


Evolutionary and synteny analysis of HIS1, BADH2, GBSS1, and GBSS2 in rice: insights for effective introgression breeding strategies.

Lim I, Park Y, Ha J Sci Rep. 2024; 14(1):5226.

PMID: 38433262 PMC: 10909864. DOI: 10.1038/s41598-024-55581-w.


References
1.
Bignell G, Santarius T, Pole J, Butler A, Perry J, Pleasance E . Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. Genome Res. 2007; 17(9):1296-303. PMC: 1950898. DOI: 10.1101/gr.6522707. View

2.
Swanson-Wagner R, Eichten S, Kumari S, Tiffin P, Stein J, Ware D . Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res. 2010; 20(12):1689-99. PMC: 2989995. DOI: 10.1101/gr.109165.110. View

3.
Saxena R, Edwards D, Varshney R . Structural variations in plant genomes. Brief Funct Genomics. 2014; 13(4):296-307. PMC: 4110416. DOI: 10.1093/bfgp/elu016. View

4.
Munoz-Amatriain M, Eichten S, Wicker T, Richmond T, Mascher M, Steuernagel B . Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biol. 2013; 14(6):R58. PMC: 3706897. DOI: 10.1186/gb-2013-14-6-r58. View

5.
Xu X, Liu X, Ge S, Jensen J, Hu F, Li X . Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol. 2011; 30(1):105-11. DOI: 10.1038/nbt.2050. View