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The RNA Polymerase II CTD "orphan" Residues: Emerging Insights into the Functions of Tyr-1, Thr-4, and Ser-7

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Journal Transcription
Specialty Molecular Biology
Date 2017 Aug 4
PMID 28771071
Citations 20
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Abstract

The C-terminal domain (CTD) of the RNA polymerase II largest subunit consists of a unique repeated heptad sequence of the consensus Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. An important function of the CTD is to couple transcription with RNA processing reactions that occur during the initiation, elongation, and termination phases of transcription. During this transcription cycle, the CTD is subject to extensive modification, primarily phosphorylation, on its non-proline residues. Reversible phosphorylation of Ser2 and Ser5 is well known to play important and general functions during transcription in all eukaryotes. More recent studies have enhanced our understanding of Tyr1, Thr4, and Ser7, and what have been previously characterized as unknown or specialized functions for these residues has changed to a more fine-detailed map of transcriptional regulation that highlights similarities as well as significant differences between organisms. Here, we review recent findings on the function and modification of these three residues, which further illustrate the importance of the CTD in precisely modulating gene expression.

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References
1.
Vasiljeva L, Kim M, Mutschler H, Buratowski S, Meinhart A . The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain. Nat Struct Mol Biol. 2008; 15(8):795-804. PMC: 2597375. DOI: 10.1038/nsmb.1468. View

2.
Sims 3rd R, Rojas L, Beck D, Bonasio R, Schuller R, Drury 3rd W . The C-terminal domain of RNA polymerase II is modified by site-specific methylation. Science. 2011; 332(6025):99-103. PMC: 3773223. DOI: 10.1126/science.1202663. View

3.
Hanes S . Prolyl isomerases in gene transcription. Biochim Biophys Acta. 2014; 1850(10):2017-34. PMC: 4417086. DOI: 10.1016/j.bbagen.2014.10.028. View

4.
West M, Corden J . Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutations. Genetics. 1995; 140(4):1223-33. PMC: 1206689. DOI: 10.1093/genetics/140.4.1223. View

5.
Burugula B, Jeronimo C, Pathak R, Jones J, Robert F, Govind C . Histone deacetylases and phosphorylated polymerase II C-terminal domain recruit Spt6 for cotranscriptional histone reassembly. Mol Cell Biol. 2014; 34(22):4115-29. PMC: 4248711. DOI: 10.1128/MCB.00695-14. View