Neviani E, Gatti M, Gardini F, Levante A
Foods. 2025; 14(5).
PMID: 40077532
PMC: 11899173.
DOI: 10.3390/foods14050830.
Hong J, Xue W, Wang T
Elife. 2025; 13.
PMID: 40029705
PMC: 11875537.
DOI: 10.7554/eLife.99593.
Yao Z, Xie T, Deng H, Xiao S, Yang T
Foods. 2025; 14(2).
PMID: 39856881
PMC: 11764801.
DOI: 10.3390/foods14020216.
Coban H, Olgun D, Temur I, Durak M
Microorganisms. 2025; 12(12.
PMID: 39770631
PMC: 11679738.
DOI: 10.3390/microorganisms12122428.
Chaves C, Salamandane A, Vieira E, Salamandane C
Int J Microbiol. 2025; 2024:2409270.
PMID: 39749146
PMC: 11695086.
DOI: 10.1155/ijm/2409270.
The detailed analysis of the microbiome and resistome of artisanal blue-veined cheeses provides evidence on sources and patterns of succession linked with quality and safety traits.
Alexa E, Cobo-Diaz J, Renes E, O Callaghan T, Kilcawley K, Mannion D
Microbiome. 2024; 12(1):78.
PMID: 38678226
PMC: 11055350.
DOI: 10.1186/s40168-024-01790-4.
Bacteriocins: potentials and prospects in health and agrifood systems.
Reuben R, Torres C
Arch Microbiol. 2024; 206(5):233.
PMID: 38662051
PMC: 11045635.
DOI: 10.1007/s00203-024-03948-y.
Horizontal gene transfer is predicted to overcome the diversity limit of competing microbial species.
Zhu S, Hong J, Wang T
Nat Commun. 2024; 15(1):800.
PMID: 38280843
PMC: 10821886.
DOI: 10.1038/s41467-024-45154-w.
Massively parallel single-cell sequencing of diverse microbial populations.
Lan F, Saba J, Ross T, Zhou Z, Krauska K, Anantharaman K
Nat Methods. 2024; 21(2):228-235.
PMID: 38233503
PMC: 11089590.
DOI: 10.1038/s41592-023-02157-7.
Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution.
Cumsille A, Serna-Cardona N, Gonzalez V, Claverias F, Undabarrena A, Molina V
BMC Genomics. 2023; 24(1):622.
PMID: 37858045
PMC: 10588199.
DOI: 10.1186/s12864-023-09694-7.
Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality.
Walsh A, Macori G, Kilcawley K, Cotter P
Nat Food. 2023; 1(8):500-510.
PMID: 37128079
DOI: 10.1038/s43016-020-0129-3.
Integrated molecular approaches for fermented food microbiome research.
Walsh A, Leech J, Huttenhower C, Delhomme-Nguyen H, Crispie F, Chervaux C
FEMS Microbiol Rev. 2023; 47(2).
PMID: 36725208
PMC: 10002906.
DOI: 10.1093/femsre/fuad001.
Plasmid-Encoded Traits Vary across Environments.
Finks S, Martiny J
mBio. 2023; 14(1):e0319122.
PMID: 36629415
PMC: 9973032.
DOI: 10.1128/mbio.03191-22.
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities.
Saak C, Pierce E, Dinh C, Portik D, Hall R, Ashby M
mSystems. 2023; 8(1):e0070122.
PMID: 36622155
PMC: 9948695.
DOI: 10.1128/msystems.00701-22.
Universal drivers of cheese microbiomes.
Reuben R, Langer D, Eisenhauer N, Jurburg S
iScience. 2022; 26(1):105744.
PMID: 36582819
PMC: 9792889.
DOI: 10.1016/j.isci.2022.105744.
Distribution, Phylogeny and Evolution of Clinical and Environmental Antibiotic-Resistant Genes.
Geng N, Sun G, Liu W, Gao B, Sun C, Xu C
Evol Bioinform Online. 2022; 18:11769343221134400.
PMID: 36404992
PMC: 9669696.
DOI: 10.1177/11769343221134400.
Effect of biochar on antibiotics and antibiotic resistance genes variations during co-composting of pig manure and corn straw.
Tong Z, Liu F, Tian Y, Zhang J, Liu H, Duan J
Front Bioeng Biotechnol. 2022; 10:960476.
PMID: 35979171
PMC: 9377313.
DOI: 10.3389/fbioe.2022.960476.
Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.
Garza D, von Meijenfeldt F, van Dijk B, Boleij A, Huynen M, Dutilh B
BMC Ecol Evol. 2022; 22(1):101.
PMID: 35974327
PMC: 9382767.
DOI: 10.1186/s12862-022-02052-3.
Genomic Insight Into SP5, Reveals Genes and Gene Clusters of Probiotic Interest and Biotechnological Potential.
Kiousi D, Efstathiou C, Tegopoulos K, Mantzourani I, Alexopoulos A, Plessas S
Front Microbiol. 2022; 13:922689.
PMID: 35783439
PMC: 9244547.
DOI: 10.3389/fmicb.2022.922689.
Comparative Genomics Unveils the Habitat Adaptation and Metabolic Profiles of in an Artificial Ecosystem for Liquor Production.
Fang G, Chai L, Zhong X, Lu Z, Zhang X, Wu L
mSystems. 2022; 7(3):e0029722.
PMID: 35491831
PMC: 9238394.
DOI: 10.1128/msystems.00297-22.