» Articles » PMID: 28518058

Prediction of NSCLC Recurrence from Microarray Data with GEP

Overview
Journal IET Syst Biol
Publisher Wiley
Specialty Biology
Date 2017 May 19
PMID 28518058
Citations 4
Authors
Affiliations
Soon will be listed here.
Abstract

Lung cancer is one of the deadliest diseases in the world. Non-small cell lung cancer (NSCLC) is the most common and dangerous type of lung cancer. Despite the fact that NSCLC is preventable and curable for some cases if diagnosed at early stages, the vast majority of patients are diagnosed very late. Furthermore, NSCLC usually recurs sometime after treatment. Therefore, it is of paramount importance to predict NSCLC recurrence, so that specific and suitable treatments can be sought. Nonetheless, conventional methods of predicting cancer recurrence rely solely on histopathology data and predictions are not reliable in many cases. The microarray gene expression (GE) technology provides a promising and reliable way to predict NSCLC recurrence by analysing the GE of sample cells. This study proposes a new model from GE programming to use microarray datasets for NSCLC recurrence prediction. To this end, the authors also propose a hybrid method to rank and select relevant prognostic genes that are related to NSCLC recurrence prediction. The proposed model was evaluated on real NSCLC microarray datasets and compared with other representational models. The results demonstrated the effectiveness of the proposed model.

Citing Articles

Predictive Study on the Occurrence of Wheat Blossom Midges Based on Gene Expression Programming with Support Vector Machines.

Li Y, Lv Y, Guo J, Wang Y, Tian Y, Gao H Insects. 2024; 15(7).

PMID: 39057196 PMC: 11277194. DOI: 10.3390/insects15070463.


Deep gene selection method to select genes from microarray datasets for cancer classification.

Alanni R, Hou J, Azzawi H, Xiang Y BMC Bioinformatics. 2019; 20(1):608.

PMID: 31775613 PMC: 6880643. DOI: 10.1186/s12859-019-3161-2.


Cancer adjuvant chemotherapy prediction model for non-small cell lung cancer.

Alanni R, Hou J, Azzawi H, Xiang Y IET Syst Biol. 2019; 13(3):129-135.

PMID: 31170692 PMC: 8687172. DOI: 10.1049/iet-syb.2018.5060.


A novel gene selection algorithm for cancer classification using microarray datasets.

Alanni R, Hou J, Azzawi H, Xiang Y BMC Med Genomics. 2019; 12(1):10.

PMID: 30646919 PMC: 6334429. DOI: 10.1186/s12920-018-0447-6.

References
1.
Azzawi H, Hou J, Xiang Y, Alanni R . Lung cancer prediction from microarray data by gene expression programming. IET Syst Biol. 2016; 10(5):168-178. PMC: 8687242. DOI: 10.1049/iet-syb.2015.0082. View

2.
Kim W, Kim K, Lee J, Noh D, Kim S, Jung Y . Development of novel breast cancer recurrence prediction model using support vector machine. J Breast Cancer. 2012; 15(2):230-8. PMC: 3395748. DOI: 10.4048/jbc.2012.15.2.230. View

3.
Ransohoff D . Rules of evidence for cancer molecular-marker discovery and validation. Nat Rev Cancer. 2004; 4(4):309-14. DOI: 10.1038/nrc1322. View

4.
Barrett T, Wilhite S, Ledoux P, Evangelista C, Kim I, Tomashevsky M . NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2012; 41(Database issue):D991-5. PMC: 3531084. DOI: 10.1093/nar/gks1193. View

5.
Kawata Y, Niki N, Ohmatsu H, Kusumoto M, Tsuchida T, Eguchi K . Quantitative classification based on CT histogram analysis of non-small cell lung cancer: correlation with histopathological characteristics and recurrence-free survival. Med Phys. 2012; 39(2):988-1000. DOI: 10.1118/1.3679017. View